Os10g0534400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to E4 protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os10g0534400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to E4 protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131 | 0.538 | 9.39 | -3.56 | 1.3 | -2.62 | 2.52 | -2.05 | -0.671 | 6.41 | 28.03 | 5227 | -- | -- |
| 134.36 | 0.54 | 9.44 | -3.88 | 1.29 | -2.35 | 2.5 | -- | -0.678 | 6.4 | 45.19 | 5295 | -- | -- |
| 146.37 | 0.563 | 9.39 | -3.5 | 1.29 | -2.65 | -- | -2.27 | -0.674 | 6.26 | 27.3 | 5335 | -- | -- |
| 149.69 | 0.57 | 9.45 | -3.85 | 1.29 | -2.33 | -- | -- | -0.685 | 6.25 | 39.59 | 5327 | -- | -- |
| 228.85 | 0.705 | 9.42 | -3.49 | -- | -2.76 | -- | -2.4 | -0.677 | -- | 27.71 | 5621 | -- | -- |
| 225.85 | 0.705 | 9.34 | -2.77 | 1.3 | -- | 2.41 | -- | -0.207 | 6.04 | -- | -- | -- | -- |
| 239.84 | 0.725 | 9.34 | -2.75 | 1.32 | -- | -- | -- | -0.217 | 5.87 | -- | -- | -- | -- |
| 231.62 | 0.709 | 9.48 | -3.87 | -- | -2.42 | -- | -- | -0.7 | -- | 45.27 | 5623 | -- | -- |
| 434.49 | 0.976 | 9.29 | -- | 1.39 | -0.671 | -- | -- | 0.00943 | 5.54 | 50.18 | 289 | -- | -- |
| 329.6 | 0.848 | 9.36 | -2.71 | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
| 439.3 | 0.98 | 9.27 | -- | 1.27 | -- | -- | -- | 0.0897 | 5.97 | -- | -- | -- | -- |
| 510.15 | 1.05 | 9.32 | -- | -- | -0.825 | -- | -- | -0.00682 | -- | 37.31 | 1304 | -- | -- |
| 523.49 | 1.07 | 9.29 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.09 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 2 | 125.35 | temperature | 20 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 4 | 125.49 | temperature | 20 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 22 | 126.96 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 24 | 127.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 28 | 127.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 29 | 127.56 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 34 | 127.57 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 86 | 128.08 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 136 | 128.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 143 | 128.65 | radiation | 1 | 43200 | < th | dose independent | sin | 16 | NA |
| 154 | 128.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 6 |
| 156 | 128.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 199 | 128.97 | temperature | 10 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 237 | 129.11 | temperature | 30 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 266 | 129.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 267 | 129.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 273 | 129.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 278 | 129.20 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 20 | NA |
| 300 | 129.25 | radiation | 20 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 305 | 129.26 | radiation | 1 | 43200 | > th | dose independent | sin | 16 | NA |
| 309 | 129.27 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 335 | 129.32 | radiation | 20 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 373 | 129.38 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 392 | 129.41 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 433 | 129.49 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 459 | 129.52 | radiation | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 468 | 129.52 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 12 | 17 |
| 570 | 129.63 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 617 | 129.65 | atmosphere | 1005 | 43200 | > th | dose dependent | no | NA | NA |
| 666 | 129.70 | radiation | 1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 673 | 129.70 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 719 | 129.77 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 743 | 129.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 15 | 20 |
| 789 | 129.86 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 911 | 129.98 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 912 | 129.98 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 931 | 130.00 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 19 |