BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0123800 Os03g0123800|AK069496
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0123800 Conserved hypothetical protein 282 1e-76
Os10g0535600 Conserved hypothetical protein 100 9e-22
>Os03g0123800 Conserved hypothetical protein
Length = 212
Score = 282 bits (722), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/212 (70%), Positives = 150/212 (70%)
Query: 1 MVEKTKLQLPLVHNERLWARPWRWAKTVFFLVSMLASLLLVCXXXXXXXXXXXXXXXXXX 60
MVEKTKLQLPLVHNERLWARPWRWAKTVFFLVSMLASLLLVC
Sbjct: 1 MVEKTKLQLPLVHNERLWARPWRWAKTVFFLVSMLASLLLVCAPPLLIVVLDLLLPPALL 60
Query: 61 SNFHRAANHPTSLIDQARGFHFRSSLVDLPAVSAARSLLILXXXXXXXXXXXXLWVAVAC 120
SNFHRAANHPTSLIDQARGFHFRSSLVDLPAVSAARSLLIL LWVAVAC
Sbjct: 61 SNFHRAANHPTSLIDQARGFHFRSSLVDLPAVSAARSLLILCAYTACGGGAAYLWVAVAC 120
Query: 121 SVGSVCYXXXXXXXXXXXXPDRAVLGLQGKGQLVAVEXXXXXXXXXXXXXXXXXXXXSCR 180
SVGSVCY PDRAVLGLQGKGQLVAVE SCR
Sbjct: 121 SVGSVCYVVAKAAVVFGAAPDRAVLGLQGKGQLVAVEAMFLMSLALAAAHIAMAYRASCR 180
Query: 181 ERRRLLVYRIDVEAVRLKGGQTPKSLKQQFAV 212
ERRRLLVYRIDVEAVRLKGGQTPKSLKQQFAV
Sbjct: 181 ERRRLLVYRIDVEAVRLKGGQTPKSLKQQFAV 212
>Os10g0535600 Conserved hypothetical protein
Length = 215
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 99/213 (46%), Gaps = 23/213 (10%)
Query: 1 MVEKTKLQLPLV---------HNERLWARPWRWAKTVFFLVSMLASLLLVCXXXXXXXXX 51
M EK L LP+ ER+WARPWRWAKT FF+V+M+ASLLLVC
Sbjct: 1 MAEKRLLLLPVALAMAQKHGGGGERVWARPWRWAKTAFFVVAMIASLLLVCAPPVLVVIL 60
Query: 52 XXXXXXXXXSNFHR------AANHPTSLIDQARGFHFRSSLVDLPAVSAARSLLILXXXX 105
S R A+ +++ QAR F FRSSLVDL AVSAAR+LLIL
Sbjct: 61 DLALPPALLSARLRGGGGGDDASFVAAVVAQARAFDFRSSLVDLLAVSAARALLILGAYM 120
Query: 106 X-XXXXXXXLWVAVACSVGSVCYXXXXXXXXXXXXPDRAVL-GLQGKGQLVAVEXXXXXX 163
LWV + GSV Y P R V +GKG E
Sbjct: 121 ACGGGGAAYLWVVATSAAGSVSY--VLAKAAAAVLPRRGVAPAPEGKGP----EPMLLLS 174
Query: 164 XXXXXXXXXXXXXXSCRERRRLLVYRIDVEAVR 196
SCRERRRLLVYRIDVEAV+
Sbjct: 175 VALAAAHLAVAYRTSCRERRRLLVYRIDVEAVK 207
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,651,001
Number of extensions: 102405
Number of successful extensions: 235
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)