Os03g0123800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0123800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.92 | 0.425 | 9.62 | 1.43 | 1.03 | 1.1 | 0.163 | 0.609 | 0.714 | 11.9 | 28.69 | 673 | -- | -- |
| 81.93 | 0.422 | 9.61 | 1.52 | 1.04 | 1.14 | 0.189 | -- | 0.745 | 12 | 28.6 | 652 | -- | -- |
| 81.9 | 0.422 | 9.62 | 1.43 | 1.03 | 1.09 | -- | 0.658 | 0.72 | 11.9 | 28.55 | 657 | -- | -- |
| 82.08 | 0.422 | 9.61 | 1.53 | 1.04 | 1.15 | -- | -- | 0.747 | 12 | 28.6 | 652 | -- | -- |
| 131.2 | 0.533 | 9.58 | 1.61 | -- | 1.41 | -- | 0.453 | 0.974 | -- | 26.4 | 785 | -- | -- |
| 108.3 | 0.488 | 9.62 | 1.29 | 1.27 | -- | 0.485 | -- | 0.638 | 10.4 | -- | -- | -- | -- |
| 109.25 | 0.489 | 9.62 | 1.31 | 1.27 | -- | -- | -- | 0.639 | 10.4 | -- | -- | -- | -- |
| 130.66 | 0.532 | 9.57 | 1.72 | -- | 1.38 | -- | -- | 0.984 | -- | 26.3 | 790 | -- | -- |
| 140.4 | 0.552 | 9.65 | -- | 1.08 | 0.809 | -- | -- | 0.545 | 11.4 | 28.7 | 646 | -- | -- |
| 207.61 | 0.673 | 9.65 | 1.29 | -- | -- | -- | -- | 0.635 | -- | -- | -- | -- | -- |
| 154.37 | 0.581 | 9.65 | -- | 1.26 | -- | -- | -- | 0.493 | 10.3 | -- | -- | -- | -- |
| 202.3 | 0.662 | 9.66 | -- | -- | 1.21 | -- | -- | 0.598 | -- | 28.2 | 797 | -- | -- |
| 251.36 | 0.74 | 9.68 | -- | -- | -- | -- | -- | 0.492 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 2 | 82.32 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 7 | 82.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 13 | 82.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 31 | 82.80 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 33 | 82.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 20 |
| 35 | 82.82 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 45 | 82.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 13 |
| 61 | 82.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 71 | 83.06 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 81 | 83.08 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 93 | 83.09 | temperature | 25 | 720 | > th | dose dependent | sin | 21 | NA |
| 180 | 84.03 | temperature | 30 | 720 | > th | dose dependent | sin | 11 | NA |
| 199 | 84.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 200 | 84.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 226 | 84.89 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 18 |
| 227 | 84.89 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 21 |
| 234 | 84.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 272 | 85.15 | humidity | 60 | 720 | > th | dose independent | rect. | 14 | 17 |
| 281 | 85.24 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 10 |
| 286 | 85.29 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 14 |
| 290 | 85.33 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 292 | 85.36 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 12 |
| 294 | 85.39 | humidity | 60 | 720 | > th | dose independent | rect. | 14 | 9 |
| 328 | 85.70 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 19 |
| 335 | 85.74 | temperature | 30 | 720 | > th | dose independent | sin | 15 | NA |
| 337 | 85.77 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 18 |
| 413 | 86.09 | temperature | 30 | 720 | < th | dose independent | sin | 16 | NA |
| 513 | 86.45 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 1 |
| 571 | 86.58 | humidity | 70 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 589 | 86.66 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 8 |
| 607 | 86.68 | humidity | 70 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 631 | 86.74 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 6 |
| 662 | 86.76 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 4 |
| 741 | 86.87 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 18 |
| 854 | 86.95 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 7 |
| 865 | 87.02 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 13 |
| 872 | 87.05 | humidity | 70 | 720 | < th | dose dependent | sin | 13 | NA |
| 886 | 87.09 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 23 |
| 910 | 87.12 | humidity | 60 | 720 | < th | dose independent | sin | 14 | NA |
| 926 | 87.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 17 |
| 976 | 87.28 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 977 | 87.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 7 |