BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0123800 Os03g0123800|AK069496
         (212 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40095.1  | chr2:16743107-16744455 FORWARD LENGTH=210           60   7e-10

>AT2G40095.1 | chr2:16743107-16744455 FORWARD LENGTH=210
          Length = 209

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 72/187 (38%), Gaps = 14/187 (7%)

Query: 14  NERLWARPWRWAKTVFFLVSMLASLLLVCXXXXXXXXXXXXXXXXXXSNFHRAANHPTSL 73
             +LW+  WR  KT+F L +M  S LLV                      HR ++ P +L
Sbjct: 11  TRKLWSSLWRGIKTIFVLFTMFFSFLLVSAPIFLAVADALLPSAL----LHRFSS-PATL 65

Query: 74  IDQARGFHFRSSLVDLPAVSAARSLLILXXXXX----XXXXXXXLWVAVACSVGSVCYXX 129
                 + FR SL+D+P +S  RS +IL                L + + CS+ S+ Y  
Sbjct: 66  SSHLTNYDFRHSLIDIPLISIIRSAVILCVYGLCDGPKLSRGPYLTITMICSISSLIYVS 125

Query: 130 XXXXXXXXXXPDRAVLGLQGKGQLVAVEXXXXX-XXXXXXXXXXXXXXXSCRERRRLLVY 188
                          +G  G     A E                     SCRER++LLV+
Sbjct: 126 LKAAFVF----GEPAIGDGGGNYFRAAEVALFLCSSVLAIGHIVVAYRTSCRERKKLLVF 181

Query: 189 RIDVEAV 195
           +ID+EAV
Sbjct: 182 KIDIEAV 188



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,860,587
Number of extensions: 61740
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)