BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0118600 Os03g0118600|AK065477
         (301 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0118600  Similar to Dihydrodipicolinate reductase-like ...   617   e-177
Os03g0117000  Dihydrodipicolinate reductase family protein        356   1e-98

>Os03g0118600 Similar to Dihydrodipicolinate reductase-like protein
          Length = 301

 Score =  617 bits (1592), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 301/301 (100%), Positives = 301/301 (100%)

Query: 1   MATLCHSAHTRTFGKIGRRNAAKVLCSTQMPPSQSTIKVVIIGATKEIGRTAIAAVSKAR 60
           MATLCHSAHTRTFGKIGRRNAAKVLCSTQMPPSQSTIKVVIIGATKEIGRTAIAAVSKAR
Sbjct: 1   MATLCHSAHTRTFGKIGRRNAAKVLCSTQMPPSQSTIKVVIIGATKEIGRTAIAAVSKAR 60

Query: 61  GMELAGAIDSQCIGLDAGEISGMEEALEIPVLNDLTMVLGSIAQTRATGVVVDFSEPSTV 120
           GMELAGAIDSQCIGLDAGEISGMEEALEIPVLNDLTMVLGSIAQTRATGVVVDFSEPSTV
Sbjct: 61  GMELAGAIDSQCIGLDAGEISGMEEALEIPVLNDLTMVLGSIAQTRATGVVVDFSEPSTV 120

Query: 121 YDNVKQAAAFGLNSVVYVPKIELDTVTELSAFCEKASMGCLVTPTLSIGSVLLQQAAIQA 180
           YDNVKQAAAFGLNSVVYVPKIELDTVTELSAFCEKASMGCLVTPTLSIGSVLLQQAAIQA
Sbjct: 121 YDNVKQAAAFGLNSVVYVPKIELDTVTELSAFCEKASMGCLVTPTLSIGSVLLQQAAIQA 180

Query: 181 SFHYNNVEIVESRPNPSDLPSQDAIQIANNITDLGQIYNREDMDSDNPARGQILGEDGVR 240
           SFHYNNVEIVESRPNPSDLPSQDAIQIANNITDLGQIYNREDMDSDNPARGQILGEDGVR
Sbjct: 181 SFHYNNVEIVESRPNPSDLPSQDAIQIANNITDLGQIYNREDMDSDNPARGQILGEDGVR 240

Query: 241 VHSMVLPGLASSTSIHFSGPGEIYTLRHDVTNVQCLMPGLILAIRKVIRLKNLIYGLEKF 300
           VHSMVLPGLASSTSIHFSGPGEIYTLRHDVTNVQCLMPGLILAIRKVIRLKNLIYGLEKF
Sbjct: 241 VHSMVLPGLASSTSIHFSGPGEIYTLRHDVTNVQCLMPGLILAIRKVIRLKNLIYGLEKF 300

Query: 301 L 301
           L
Sbjct: 301 L 301



>Os03g0117000 Dihydrodipicolinate reductase family protein
          Length = 319

 Score =  356 bits (913), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/317 (64%), Positives = 218/317 (68%), Gaps = 71/317 (22%)

Query: 18  RRNAAKVLCSTQMPPSQSTI------------KVVIIGATKEIGRTAIAAVSKARGMELA 65
           +R++A+  C      S ST+            KVVIIGAT+EIGRTAI AVSKARGMELA
Sbjct: 41  QRSSAQRRCRHLRSQSSSTVTCSEGKIWWYIEKVVIIGATREIGRTAIVAVSKARGMELA 100

Query: 66  GAIDSQCIGLDAGEISGMEEALEIPVLNDLTMVLGSIAQTRATGVVVDFSEPSTVYDNVK 125
           GAIDSQC+GLDAGEI+GMEEALEIPVLNDLTMVLGSIAQ+RATGVVVDFSEPSTVYDNVK
Sbjct: 101 GAIDSQCVGLDAGEINGMEEALEIPVLNDLTMVLGSIAQSRATGVVVDFSEPSTVYDNVK 160

Query: 126 Q---------------------AAAFGLNSVVYVPKIELDTVTELSAFCEKASMGCLVTP 164
           Q                     AAAFGLNSVVYVP IELDTVTELSAFCEKASM      
Sbjct: 161 QVSYPPTIWGKKLSYIVKWDCEAAAFGLNSVVYVPNIELDTVTELSAFCEKASMP----- 215

Query: 165 TLSIGSVLLQQAAIQASFHYNNVEIVESRPNPSDLPSQDAIQIANNITDLGQIYNREDMD 224
               G +   +   +    Y                     QI    T  G+I       
Sbjct: 216 ----GRICHHKMQYRLQIIY---------------------QILVRYTT-GKI------- 242

Query: 225 SDNPARGQILGEDGVRVHSMVLPGLASSTSIHFSGPGEIYTLRHDVTNVQCLMPGLILAI 284
           SDNPARGQILGEDGVRVHSMVLPGLASSTSI+FSGPGEIYTLRHDVTNVQCLMPGLILAI
Sbjct: 243 SDNPARGQILGEDGVRVHSMVLPGLASSTSINFSGPGEIYTLRHDVTNVQCLMPGLILAI 302

Query: 285 RKVIRLKNLIYGLEKFL 301
           RKV+RLKNLIYGLEKFL
Sbjct: 303 RKVVRLKNLIYGLEKFL 319



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,191,417
Number of extensions: 352403
Number of successful extensions: 776
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 3
Length of query: 301
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 201
Effective length of database: 11,814,401
Effective search space: 2374694601
Effective search space used: 2374694601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)