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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0117000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Dihydrodipicolinate reductase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.06 (0.0555) R2 : 0.606
β1 : -2.47 (0.204) R2dD : 0.132 R2D : 0.0758
β2 : 3.24 (0.247) R2dC : 0.529 R2C : 0.327
β3 : -0.749 (0.248) R2dE : 0.0277 R2E : -0.195
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.58 (0.522) R2dD*E : 0.102 R2D*E : 0.109
γ1 : -0.777 (0.118) R2dN8 : 0.0479 R2N8 : 0.011
σ : 1.03
deviance : 493.62
__
_____
C
peak time of C : 23.9
E
wheather : atmosphere
threshold : 999.3
memory length : 26
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 8.09
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
492.07 1.04 4.02 -2.22 2.43 0.159 5.7 -10.8 -0.767 0.46 999.3 34 7.05 --
507.28 1.06 4.12 -2.74 4.41 -1.9 -5.09 -- -0.77 23.7 999.3 34 7.05 --
493.62 1.03 4.06 -2.47 3.24 -0.749 -- -5.58 -0.777 23.9 999.3 26 8.09 --
615.68 1.16 4.1 -2.51 3.99 -1.38 -- -- -0.764 0.125 999.2 26 6.29 --
541.95 1.08 4.03 -2.64 -- 2.69 -- -5.24 -0.787 -- 966.6 113 6.87 --
539.81 1.09 4.09 -2.59 2.67 -- -4.68 -- -0.818 0.0168 -- -- -- --
632.06 1.18 4.08 -2.41 2.7 -- -- -- -0.802 0.336 -- -- -- --
632.06 1.17 4.03 -2.41 -- 2.69 -- -- -0.802 -- 973.4 132 6.76 --
779.04 1.31 4.03 -- 3.49 -0.879 -- -- -0.503 0.145 999.2 26 6.29 --
1089.56 1.54 4.02 -2.32 -- -- -- -- -0.759 -- -- -- -- --
785.75 1.31 4.02 -- 2.66 -- -- -- -0.533 0.289 -- -- -- --
785.75 1.31 3.97 -- -- 2.66 -- -- -0.533 -- 981.8 117 6.69 --
1232.09 1.64 3.97 -- -- -- -- -- -0.501 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 481.15 temperature 15.0 90 > th dose dependent rect. 21 8
3 484.34 atmosphere 1000.0 10 > th dose independent rect. 17 11
5 485.87 atmosphere 995.0 720 > th dose independent rect. 9 7
6 486.18 temperature 15.0 270 > th dose dependent rect. 19 9
9 486.60 atmosphere 995.0 720 > th dose independent rect. 4 17
12 487.16 wind 1.0 90 > th dose independent rect. 4 17
14 487.32 temperature 10.0 270 > th dose dependent rect. 21 14
16 487.82 atmosphere 1000.0 720 > th dose independent rect. 18 7
17 487.86 radiation 40.0 90 < th dose independent rect. 11 10
23 489.10 temperature 10.0 1440 > th dose independent rect. 22 8
26 489.10 temperature 30.0 1440 < th dose independent rect. 22 8
30 489.10 humidity 50.0 1440 > th dose independent rect. 22 8
37 489.10 atmosphere 995.0 1440 > th dose independent rect. 22 8
38 489.10 radiation 20.0 1440 < th dose independent rect. 22 8
47 489.10 temperature 10.0 1440 > th dose independent rect. 6 16
50 489.46 wind 7.0 270 < th dose independent rect. 21 14
53 490.47 atmosphere 1015.0 90 < th dose dependent rect. 21 8
56 491.05 precipitation 0.1 720 < th dose independent rect. 21 7
57 491.05 precipitation 0.1 720 < th dose dependent rect. 21 7
58 491.06 atmosphere 1015.0 270 < th dose independent rect. 21 14
63 491.29 wind 1.0 90 > th dose independent rect. 17 11
65 491.40 radiation 40.0 90 < th dose independent rect. 13 8
66 491.68 radiation 40.0 1440 < th dose dependent rect. 22 7
68 491.71 wind 9.0 270 < th dose independent rect. 11 10
71 491.79 atmosphere 995.0 720 > th dose independent rect. 13 17
72 491.87 precipitation 0.1 270 < th dose independent rect. 21 14
73 491.87 precipitation 0.1 270 < th dose dependent rect. 21 14
75 491.93 precipitation 0.1 720 < th dose independent rect. 16 17
77 491.93 precipitation 0.1 720 < th dose dependent rect. 16 17
85 492.48 temperature 15.0 270 > th dose independent rect. 11 10
88 492.68 precipitation 0.1 90 < th dose independent rect. 21 8
89 492.68 precipitation 0.1 90 < th dose dependent rect. 21 8
99 493.06 wind 7.0 90 < th dose independent rect. 13 8
103 493.07 radiation 1.0 90 < th dose independent rect. 16 12
104 493.08 humidity 90.0 720 < th dose independent rect. 21 3
105 493.14 wind 7.0 90 < th dose independent rect. 21 8
109 493.33 humidity 50.0 270 > th dose independent rect. 21 14
110 493.37 wind 9.0 720 < th dose independent rect. 21 7
112 493.43 wind 7.0 30 < th dose independent rect. 15 6
115 493.57 temperature 10.0 270 > th dose independent rect. 21 14
116 493.57 atmosphere 995.0 270 > th dose independent rect. 21 14
123 493.84 radiation 1.0 90 < th dose dependent rect. 21 8
126 493.90 atmosphere 1000.0 30 > th dose independent sin 13 NA
127 493.95 radiation 1.0 10 < th dose dependent rect. 17 11
164 494.15 wind 9.0 90 < th dose independent rect. 5 16
169 494.21 radiation 1.0 90 < th dose independent rect. 21 8
173 494.27 temperature 10.0 10 > th dose dependent rect. 22 17
179 494.37 temperature 10.0 90 > th dose independent rect. 21 8
180 494.37 temperature 30.0 90 < th dose independent rect. 21 8
181 494.37 humidity 50.0 90 > th dose independent rect. 21 8
184 494.37 atmosphere 995.0 90 > th dose independent rect. 21 8
188 494.37 atmosphere 995.0 270 > th dose independent rect. 11 10
189 494.37 temperature 10.0 90 > th dose independent rect. 5 16
190 494.37 atmosphere 1015.0 90 < th dose independent rect. 5 16
200 494.47 radiation 1.0 720 < th dose independent rect. 21 7
206 494.47 radiation 1.0 720 < th dose dependent rect. 21 7
231 494.95 precipitation 0.1 720 < th dose independent rect. 9 7
233 494.95 precipitation 0.1 720 < th dose dependent rect. 9 7
240 495.17 atmosphere 995.0 720 > th dose independent rect. 5 23
259 495.66 wind 1.0 270 > th dose independent rect. 11 10
261 495.72 precipitation 0.1 90 < th dose independent rect. 5 16
262 495.72 precipitation 0.1 90 < th dose dependent rect. 5 16
265 495.76 temperature 10.0 720 > th dose independent rect. 9 7
266 495.76 atmosphere 1015.0 720 < th dose independent rect. 9 7
267 495.76 temperature 10.0 720 > th dose independent rect. 16 17
276 495.90 precipitation 0.1 270 < th dose independent rect. 11 10
277 495.90 precipitation 0.1 270 < th dose dependent rect. 11 10
318 496.60 atmosphere 1015.0 270 < th dose independent rect. 11 10
322 496.67 wind 1.0 720 > th dose independent rect. 21 7
329 496.87 atmosphere 1015.0 90 < th dose independent rect. 21 8
342 497.02 atmosphere 1010.0 90 < th dose independent rect. 13 8
346 497.04 precipitation 0.1 90 < th dose independent rect. 21 18
348 497.04 precipitation 0.1 90 < th dose dependent rect. 21 18
354 497.11 wind 9.0 720 < th dose independent rect. 16 17
373 497.27 temperature 20.0 270 > th dose independent rect. 19 9
374 497.27 temperature 20.0 90 > th dose independent rect. 21 18
375 497.28 wind 1.0 720 > th dose independent rect. 16 12
376 497.28 atmosphere 995.0 720 > th dose independent rect. 1 15
402 497.73 humidity 70.0 720 > th dose independent rect. 18 12
453 498.18 precipitation 0.1 90 < th dose independent rect. 13 8
454 498.18 wind 9.0 90 < th dose dependent rect. 13 8
455 498.18 precipitation 0.1 90 < th dose dependent rect. 13 8
477 498.38 temperature 30.0 720 < th dose independent rect. 18 7
524 498.52 wind 1.0 270 > th dose independent rect. 21 14
525 498.53 atmosphere 995.0 90 > th dose independent rect. 21 18
530 498.59 temperature 10.0 90 > th dose independent rect. 15 6
532 498.59 atmosphere 1010.0 90 < th dose independent rect. 15 6
535 498.59 radiation 40.0 720 < th dose independent rect. 16 17
536 498.59 temperature 10.0 90 > th dose independent rect. 21 18
537 498.60 atmosphere 995.0 720 > th dose independent rect. 9 12
548 498.70 atmosphere 995.0 90 > th dose dependent rect. 15 6
580 498.81 wind 1.0 720 > th dose independent rect. 16 9
581 498.82 wind 1.0 10 > th dose independent rect. 15 7
583 498.82 radiation 40.0 90 < th dose independent rect. 5 16
588 498.85 atmosphere 1015.0 270 < th dose independent rect. 15 10
592 498.89 humidity 70.0 10 > th dose independent rect. 17 11
596 498.90 temperature 30.0 270 < th dose independent rect. 15 10
598 498.94 wind 1.0 90 > th dose independent rect. 21 7
601 498.94 temperature 15.0 720 > th dose dependent rect. 17 7
616 499.10 atmosphere 1010.0 10 < th dose dependent rect. 24 8
619 499.12 wind 9.0 90 < th dose dependent rect. 21 8
632 499.23 precipitation 0.1 90 < th dose independent rect. 15 6
634 499.23 precipitation 0.1 90 < th dose dependent rect. 15 6
636 499.25 atmosphere 1000.0 90 > th dose independent rect. 16 7
637 499.25 atmosphere 995.0 270 > th dose dependent rect. 13 8
638 499.26 wind 1.0 90 > th dose independent rect. 15 6
643 499.31 temperature 20.0 10 > th dose independent rect. 22 17
649 499.38 temperature 30.0 270 < th dose independent rect. 21 14
651 499.41 wind 9.0 1440 < th dose independent rect. 23 7
652 499.42 temperature 10.0 1440 > th dose independent rect. 18 11
655 499.42 humidity 50.0 1440 > th dose independent rect. 18 11
657 499.42 radiation 20.0 1440 < th dose independent rect. 18 11
669 499.42 temperature 10.0 1440 > th dose independent rect. 5 13
673 499.42 atmosphere 995.0 10 > th dose dependent rect. 15 7
685 499.52 wind 7.0 270 < th dose independent rect. 19 8
687 499.53 atmosphere 1015.0 270 < th dose independent rect. 7 15
705 499.69 radiation 40.0 10 < th dose dependent rect. 11 10
713 499.73 temperature 30.0 720 < th dose independent rect. 16 1
714 499.73 temperature 15.0 1440 > th dose independent rect. 16 7
717 499.74 humidity 50.0 270 > th dose independent rect. 15 10
762 500.03 wind 1.0 270 > th dose independent rect. 19 9
766 500.05 atmosphere 995.0 720 > th dose independent rect. 9 14
775 500.15 temperature 10.0 90 > th dose dependent rect. 15 6
793 500.25 radiation 40.0 1440 < th dose independent rect. 16 7
795 500.25 precipitation 0.1 10 < th dose independent rect. 22 17
797 500.25 precipitation 0.1 10 < th dose dependent rect. 22 17
803 500.28 atmosphere 1015.0 10 < th dose independent rect. 22 17
804 500.29 atmosphere 1000.0 10 > th dose independent rect. 16 6
809 500.32 precipitation 0.1 270 < th dose independent rect. 19 8
813 500.32 precipitation 0.1 270 < th dose dependent rect. 19 8
838 500.49 humidity 50.0 90 > th dose dependent rect. 21 8
839 500.50 atmosphere 995.0 720 > th dose independent sin 9 NA
856 500.58 atmosphere 995.0 720 > th dose independent rect. 18 22
883 500.74 temperature 30.0 720 < th dose independent rect. 18 14
892 500.75 atmosphere 995.0 720 > th dose independent rect. 23 22
893 500.75 radiation 1.0 90 < th dose dependent rect. 21 19
904 500.82 temperature 30.0 90 < th dose independent rect. 17 11
913 500.84 radiation 1.0 90 < th dose dependent rect. 21 22
922 500.92 temperature 15.0 720 > th dose dependent rect. 21 2
940 501.00 temperature 10.0 10 > th dose dependent rect. 15 7
943 501.01 temperature 10.0 10 > th dose independent rect. 15 7
945 501.01 atmosphere 1010.0 10 < th dose independent rect. 15 7
948 501.01 temperature 10.0 10 > th dose independent rect. 22 17
949 501.01 atmosphere 995.0 10 > th dose independent rect. 22 17
953 501.03 atmosphere 995.0 720 > th dose independent rect. 7 20
959 501.05 atmosphere 995.0 90 > th dose independent rect. 5 16
975 501.12 radiation 40.0 10 < th dose independent rect. 15 7
978 501.14 humidity 50.0 90 > th dose independent rect. 17 11
1000 501.26 precipitation 0.1 10 < th dose independent rect. 15 7