BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0117000 Os03g0117000|Os03g0117000
         (319 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0117000  Dihydrodipicolinate reductase family protein        631   0.0  
Os03g0118600  Similar to Dihydrodipicolinate reductase-like ...   355   3e-98

>Os03g0117000 Dihydrodipicolinate reductase family protein
          Length = 319

 Score =  631 bits (1627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/319 (96%), Positives = 307/319 (96%)

Query: 1   MAYLNLRFPVISVFRTKAWLLYATLFIPEHPERLAGEMXXXXXXXXXXXXHLRSQSSSTV 60
           MAYLNLRFPVISVFRTKAWLLYATLFIPEHPERLAGEM            HLRSQSSSTV
Sbjct: 1   MAYLNLRFPVISVFRTKAWLLYATLFIPEHPERLAGEMQQQRSSAQRRCRHLRSQSSSTV 60

Query: 61  TCSEGKIWWYIEKVVIIGATREIGRTAIVAVSKARGMELAGAIDSQCVGLDAGEINGMEE 120
           TCSEGKIWWYIEKVVIIGATREIGRTAIVAVSKARGMELAGAIDSQCVGLDAGEINGMEE
Sbjct: 61  TCSEGKIWWYIEKVVIIGATREIGRTAIVAVSKARGMELAGAIDSQCVGLDAGEINGMEE 120

Query: 121 ALEIPVLNDLTMVLGSIAQSRATGVVVDFSEPSTVYDNVKQVSYPPTIWGKKLSYIVKWD 180
           ALEIPVLNDLTMVLGSIAQSRATGVVVDFSEPSTVYDNVKQVSYPPTIWGKKLSYIVKWD
Sbjct: 121 ALEIPVLNDLTMVLGSIAQSRATGVVVDFSEPSTVYDNVKQVSYPPTIWGKKLSYIVKWD 180

Query: 181 CEAAAFGLNSVVYVPNIELDTVTELSAFCEKASMPGRICHHKMQYRLQIIYQILVRYTTG 240
           CEAAAFGLNSVVYVPNIELDTVTELSAFCEKASMPGRICHHKMQYRLQIIYQILVRYTTG
Sbjct: 181 CEAAAFGLNSVVYVPNIELDTVTELSAFCEKASMPGRICHHKMQYRLQIIYQILVRYTTG 240

Query: 241 KISDNPARGQILGEDGVRVHSMVLPGLASSTSINFSGPGEIYTLRHDVTNVQCLMPGLIL 300
           KISDNPARGQILGEDGVRVHSMVLPGLASSTSINFSGPGEIYTLRHDVTNVQCLMPGLIL
Sbjct: 241 KISDNPARGQILGEDGVRVHSMVLPGLASSTSINFSGPGEIYTLRHDVTNVQCLMPGLIL 300

Query: 301 AIRKVVRLKNLIYGLEKFL 319
           AIRKVVRLKNLIYGLEKFL
Sbjct: 301 AIRKVVRLKNLIYGLEKFL 319



>Os03g0118600 Similar to Dihydrodipicolinate reductase-like protein
          Length = 301

 Score =  355 bits (911), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/285 (69%), Positives = 207/285 (72%), Gaps = 59/285 (20%)

Query: 73  KVVIIGATREIGRTAIVAVSKARGMELAGAIDSQCVGLDAGEINGMEEALEIPVLNDLTM 132
           KVVIIGAT+EIGRTAI AVSKARGMELAGAIDSQC+GLDAGEI+GMEEALEIPVLNDLTM
Sbjct: 38  KVVIIGATKEIGRTAIAAVSKARGMELAGAIDSQCIGLDAGEISGMEEALEIPVLNDLTM 97

Query: 133 VLGSIAQSRATGVVVDFSEPSTVYDNVKQVSYPPTIWGKKLSYIVKWDCEAAAFGLNSVV 192
           VLGSIAQ+RATGVVVDFSEPSTVYDNVKQ                     AAAFGLNSVV
Sbjct: 98  VLGSIAQTRATGVVVDFSEPSTVYDNVKQ---------------------AAAFGLNSVV 136

Query: 193 YVPNIELDTVTELSAFCEKASMP---------GRICHHKMQYRLQIIY------------ 231
           YVP IELDTVTELSAFCEKASM          G +   +   +    Y            
Sbjct: 137 YVPKIELDTVTELSAFCEKASMGCLVTPTLSIGSVLLQQAAIQASFHYNNVEIVESRPNP 196

Query: 232 ---------QILVRYTT-GKI-------SDNPARGQILGEDGVRVHSMVLPGLASSTSIN 274
                    QI    T  G+I       SDNPARGQILGEDGVRVHSMVLPGLASSTSI+
Sbjct: 197 SDLPSQDAIQIANNITDLGQIYNREDMDSDNPARGQILGEDGVRVHSMVLPGLASSTSIH 256

Query: 275 FSGPGEIYTLRHDVTNVQCLMPGLILAIRKVVRLKNLIYGLEKFL 319
           FSGPGEIYTLRHDVTNVQCLMPGLILAIRKV+RLKNLIYGLEKFL
Sbjct: 257 FSGPGEIYTLRHDVTNVQCLMPGLILAIRKVIRLKNLIYGLEKFL 301



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,541,000
Number of extensions: 348315
Number of successful extensions: 716
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 218
Effective length of database: 11,762,187
Effective search space: 2564156766
Effective search space used: 2564156766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)