BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0118200 Os03g0118200|AK064777
(349 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0118200 UAA transporter family protein 716 0.0
Os05g0115700 Similar to UDP-galactose transporter related p... 80 3e-15
Os06g0593100 Similar to UDP-galactose/UDP-glucose transporter 76 3e-14
>Os03g0118200 UAA transporter family protein
Length = 349
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MTGGEEQGRRLFGVSLTDRPRWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSFGWYFTF 60
MTGGEEQGRRLFGVSLTDRPRWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSFGWYFTF
Sbjct: 1 MTGGEEQGRRLFGVSLTDRPRWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSFGWYFTF 60
Query: 61 VQGFVYLGLIRLQGFTVKQMVNPWRTYVRLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTK 120
VQGFVYLGLIRLQGFTVKQMVNPWRTYVRLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTK
Sbjct: 61 VQGFVYLGLIRLQGFTVKQMVNPWRTYVRLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTK 120
Query: 121 VLPVMIMGAFIPGLRRKYPFHEYISAVMLVIGLILFTLADAQSSPNFSMIGVAMVSGALV 180
VLPVMIMGAFIPGLRRKYPFHEYISAVMLVIGLILFTLADAQSSPNFSMIGVAMVSGALV
Sbjct: 121 VLPVMIMGAFIPGLRRKYPFHEYISAVMLVIGLILFTLADAQSSPNFSMIGVAMVSGALV 180
Query: 181 MDAFLGNLQEAIFKMNPDTTQMEMLFCSTVVGLPFLVVPMVLTGELMRAWTACSQHMYVY 240
MDAFLGNLQEAIFKMNPDTTQMEMLFCSTVVGLPFLVVPMVLTGELMRAWTACSQHMYVY
Sbjct: 181 MDAFLGNLQEAIFKMNPDTTQMEMLFCSTVVGLPFLVVPMVLTGELMRAWTACSQHMYVY 240
Query: 241 AVLVFEAMATFVGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHVTGL 300
AVLVFEAMATFVGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHVTGL
Sbjct: 241 AVLVFEAMATFVGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHVTGL 300
Query: 301 LLISMGIVLKLLLENKENVPRRQVRKTVQHWDDKQREIREVEEEKAPLV 349
LLISMGIVLKLLLENKENVPRRQVRKTVQHWDDKQREIREVEEEKAPLV
Sbjct: 301 LLISMGIVLKLLLENKENVPRRQVRKTVQHWDDKQREIREVEEEKAPLV 349
>Os05g0115700 Similar to UDP-galactose transporter related protein-like
Length = 360
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 119/252 (47%), Gaps = 20/252 (7%)
Query: 81 VNPWRTYVRLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPF 140
V P + Y +S + + +L ++++P Q + K K++PVMI G I +R+KY
Sbjct: 105 VAPLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTII--MRKKYGG 162
Query: 141 HEYISAVMLVIGLILFTL--ADAQSSP-----NFSMIGVAMVSGALVMDAFLGNLQEAIF 193
+Y AV++ +G LF L A +SP ++ GV+++ G L D F Q+ +F
Sbjct: 163 KDYFFAVVVTVGCSLFILYPASMDASPFNRGRENTIWGVSLMLGYLGFDGFTSTFQDKLF 222
Query: 194 KMNPDTTQMEMLF---CSTVVGLPFLVVP--MVLTGELMRAWTACSQHMYVYAVLVFEAM 248
K ++ + CS V+ L L++ M+ + M C Y V++ ++
Sbjct: 223 KGYDMEIHNQIFYTTMCSCVLSLSGLILQNQMIPAVDFMFRHPDC-----FYDVIILSSV 277
Query: 249 ATFVGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHVTGLLLISMGIV 308
AT Q + I FGA T A + T R+ V++LLS + F PL+ G ++ +
Sbjct: 278 AT-ASQFFISYTIRTFGALTFATIMTTRQLVSILLSCVWFVHPLSWMQWVGAAIVFGALY 336
Query: 309 LKLLLENKENVP 320
K L +K P
Sbjct: 337 TKSFLRSKPQKP 348
>Os06g0593100 Similar to UDP-galactose/UDP-glucose transporter
Length = 358
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 123/260 (47%), Gaps = 23/260 (8%)
Query: 83 PWRTYVRLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHE 142
P R Y +S + +L F++YPAQ++ KS+K++PVM+MG + G+ KY F E
Sbjct: 103 PLRKYWGVSITNTVGPAMGIEALKFISYPAQVLAKSSKMIPVMLMGTILYGV--KYTFPE 160
Query: 143 YISAVMLVIGLILFTLADAQS-------SPNFSMIGVAMVSGALVMDAFLGNLQEAIFKM 195
YI ++ G+ F L S +PN + +G + L D + + Q+ I
Sbjct: 161 YICTFLVAGGVSSFALLKTSSKTIKKLANPN-APLGYTLCFLNLAFDGYTNSTQDLIKSR 219
Query: 196 NPDTTQMEMLFCSTVVGLPFLVVPMVLTGELMRAWTA---------CSQHMYVYAVLVFE 246
P T +++ + G + V M + L W C ++ V ++
Sbjct: 220 YPKTNPWDIMLGMNLWGTIYNAVIMFVAPLLFSNWPYANGFEAVRFCQENPEVAWDILLF 279
Query: 247 AMATFVGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHVTGLLLISMG 306
+ VGQ + I+ FG+ T +TT RK +++++S +I PL+ + ++++ G
Sbjct: 280 CLCGAVGQNFIFLTISRFGSLTNTTITTTRKFMSIVISSVISGNPLSLKQWGSVVMVFSG 339
Query: 307 IVLKLLLENKENVPRRQVRK 326
+ L++ L+ K R++VR
Sbjct: 340 LSLQIFLKWK----RKKVRD 355
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.140 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,234,765
Number of extensions: 374665
Number of successful extensions: 1138
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 3
Length of query: 349
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 247
Effective length of database: 11,709,973
Effective search space: 2892363331
Effective search space used: 2892363331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)