BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0116500 Os03g0116500|AK101870
         (441 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0116500  Constitutive photomorphogenic 11                    817   0.0  
Os04g0485000  Similar to 26S proteasome subunit RPN7               78   1e-14
Os02g0600100  Similar to 26S proteasome subunit RPN7               78   1e-14

>Os03g0116500 Constitutive photomorphogenic 11
          Length = 441

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/418 (94%), Positives = 395/418 (94%)

Query: 24  PSPAPVSAEQLDVEAYAAQYTGRTRLARLLFIAERCGVEAVELEALRMAYDEIKRGEDTM 83
           PSPAPVSAEQLDVEAYAAQYTGRTRLARLLFIAERCGVEAVELEALRMAYDEIKRGEDTM
Sbjct: 24  PSPAPVSAEQLDVEAYAAQYTGRTRLARLLFIAERCGVEAVELEALRMAYDEIKRGEDTM 83

Query: 84  FHREVTNKINGRLGPKYALDQAWTDSVNRRAEQRKEKLESELNGYRTNLIKESIRMGYND 143
           FHREVTNKINGRLGPKYALDQAWTDSVNRRAEQRKEKLESELNGYRTNLIKESIRMGYND
Sbjct: 84  FHREVTNKINGRLGPKYALDQAWTDSVNRRAEQRKEKLESELNGYRTNLIKESIRMGYND 143

Query: 144 IGDFFYAHGHLSDAFKSYIRTRDYCTTSKHIVQMCMNVILVSIELGQFPHVSNYVSKAEQ 203
           IGDFFYAHGHLSDAFKSYIRTRDYCTTSKHIVQMCMNVILVSIELGQFPHVSNYVSKAEQ
Sbjct: 144 IGDFFYAHGHLSDAFKSYIRTRDYCTTSKHIVQMCMNVILVSIELGQFPHVSNYVSKAEQ 203

Query: 204 TPDTLDPIIVXXXXXXXXXXXXXXXXXXXXXXXFVETGHELGNNYSEVIAPQDVAVYGAL 263
           TPDTLDPIIV                       FVETGHELGNNYSEVIAPQDVAVYGAL
Sbjct: 204 TPDTLDPIIVAKLRAAAGLAYLATKKYKLAARKFVETGHELGNNYSEVIAPQDVAVYGAL 263

Query: 264 CALASFDRSDLKSKVIDNSNFRNFLELVPEVRELVNDFYSSRYGSCLEHLEKLKTNLLLD 323
           CALASFDRSDLKSKVIDNSNFRNFLELVPEVRELVNDFYSSRYGSCLEHLEKLKTNLLLD
Sbjct: 264 CALASFDRSDLKSKVIDNSNFRNFLELVPEVRELVNDFYSSRYGSCLEHLEKLKTNLLLD 323

Query: 324 IHLHDHVETLYMDIRHKAIIQYTLPFISVDLNTMAAAFMTSVSMLEKELAALITENKIQA 383
           IHLHDHVETLYMDIRHKAIIQYTLPFISVDLNTMAAAFMTSVSMLEKELAALITENKIQA
Sbjct: 324 IHLHDHVETLYMDIRHKAIIQYTLPFISVDLNTMAAAFMTSVSMLEKELAALITENKIQA 383

Query: 384 RIDSHNKILYARHADQRNATFQRVLQTGNEFERDVKSLLLRANLIKHDFNQRAGQRKM 441
           RIDSHNKILYARHADQRNATFQRVLQTGNEFERDVKSLLLRANLIKHDFNQRAGQRKM
Sbjct: 384 RIDSHNKILYARHADQRNATFQRVLQTGNEFERDVKSLLLRANLIKHDFNQRAGQRKM 441



>Os04g0485000 Similar to 26S proteasome subunit RPN7
          Length = 389

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 254 PQDVAV-YGALCALASFDRSDLKSKVIDNSNFRNFLELVPEVRELVNDFYSSRYGSCLEH 312
           P D  + Y  L ++ S DR  LK+KV+D       +  VP + E +N  Y+ +Y S    
Sbjct: 215 PYDTFIFYTVLTSVISLDRVSLKAKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFAA 274

Query: 313 LEKLKTNLLLDIHLHDHVETLYMDIRHKAIIQYTLPFISVDLNTMAAAFMTSVSMLEKEL 372
              L   + LD +L  H      ++R     Q+   + SV +  MA+AF  +V  ++ EL
Sbjct: 275 FSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLEL 334

Query: 373 AALITENKIQARIDSHNKILYARHADQRNATFQRVLQTGN 412
           +  I   K+  +ID    +L     D RNA +Q  ++ G+
Sbjct: 335 SRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIKQGD 374



>Os02g0600100 Similar to 26S proteasome subunit RPN7
          Length = 388

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 254 PQDVAV-YGALCALASFDRSDLKSKVIDNSNFRNFLELVPEVRELVNDFYSSRYGSCLEH 312
           P D  V Y  + ++ + DR  LK KV+D       +  VP + E +N  Y+ +Y S    
Sbjct: 214 PYDTFVFYTVITSIITLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFVA 273

Query: 313 LEKLKTNLLLDIHLHDHVETLYMDIRHKAIIQYTLPFISVDLNTMAAAFMTSVSMLEKEL 372
              +   + LD +L  H      ++R     Q+   + SV +  MAAAF  +V  +++EL
Sbjct: 274 FSGMTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQEL 333

Query: 373 AALITENKIQARIDSHNKILYARHADQRNATFQRVLQTGN 412
           +  I   K+  +ID    +L     D RNA +Q  ++ G+
Sbjct: 334 SRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQATIKQGD 373



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,743,482
Number of extensions: 418096
Number of successful extensions: 952
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 951
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 337
Effective length of database: 11,605,545
Effective search space: 3911068665
Effective search space used: 3911068665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)