Os04g0485000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 26S proteasome subunit RPN7.
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Os04g0485000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 26S proteasome subunit RPN7.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.94 | 0.169 | 11.4 | 0.03 | 0.534 | 0.521 | -0.167 | 1.06 | -0.046 | 18.3 | 24.3 | 468 | -- | -- |
| 14.06 | 0.175 | 11.3 | 0.199 | 0.534 | 0.43 | -0.401 | -- | -0.0116 | 18.2 | 24.5 | 356 | -- | -- |
| 12.99 | 0.168 | 11.4 | 0.0238 | 0.533 | 0.539 | -- | 1.14 | -0.0493 | 18.2 | 24.13 | 444 | -- | -- |
| 14.41 | 0.177 | 11.3 | 0.208 | 0.533 | 0.437 | -- | -- | -0.00941 | 18 | 24.5 | 311 | -- | -- |
| 25.92 | 0.237 | 11.3 | 0.051 | -- | 0.534 | -- | 0.932 | -0.0375 | -- | 25.88 | 1319 | -- | -- |
| 16.64 | 0.191 | 11.4 | 0.0875 | 0.489 | -- | -0.395 | -- | -0.0911 | 18.3 | -- | -- | -- | -- |
| 17 | 0.193 | 11.4 | 0.0929 | 0.488 | -- | -- | -- | -0.0922 | 18.1 | -- | -- | -- | -- |
| 26.57 | 0.24 | 11.3 | 0.207 | -- | 0.412 | -- | -- | -0.0125 | -- | 28.4 | 1324 | -- | -- |
| 15.37 | 0.183 | 11.4 | -- | 0.522 | 0.354 | -- | -- | -0.0516 | 18 | 24.5 | 308 | -- | -- |
| 29.35 | 0.253 | 11.3 | 0.0791 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 17.23 | 0.194 | 11.4 | -- | 0.487 | -- | -- | -- | -0.102 | 18.1 | -- | -- | -- | -- |
| 27.54 | 0.244 | 11.3 | -- | -- | 0.317 | -- | -- | -0.0649 | -- | 74.08 | 1316 | -- | -- |
| 29.52 | 0.254 | 11.4 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 34 | 12.71 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 18 |
| 35 | 12.71 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 20 |
| 44 | 12.79 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 13 |
| 45 | 12.79 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 56 | 12.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 80 | 12.89 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 15 |
| 99 | 12.95 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 101 | 12.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 119 | 12.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 129 | 13.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 134 | 13.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 15 |
| 153 | 13.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 164 | 13.04 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 223 | 13.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 246 | 13.11 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 259 | 13.12 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 8 |
| 277 | 13.15 | temperature | 20 | 720 | > th | dose independent | sin | 21 | NA |
| 356 | 13.21 | temperature | 20 | 270 | > th | dose independent | sin | 10 | NA |
| 408 | 13.24 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 420 | 13.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 484 | 13.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 547 | 13.36 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 5 |
| 663 | 13.44 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 8 |
| 696 | 13.47 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 735 | 13.50 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 8 |
| 743 | 13.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 8 |
| 774 | 13.53 | temperature | 20 | 720 | < th | dose independent | sin | 21 | NA |
| 777 | 13.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 812 | 13.56 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 4 |
| 865 | 13.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 19 |
| 871 | 13.59 | temperature | 20 | 720 | < th | dose independent | sin | 18 | NA |
| 872 | 13.59 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 6 |
| 878 | 13.59 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 18 |
| 968 | 13.64 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 14 |