Os03g0116500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Constitutive photomorphogenic 11.
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Os03g0116500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Constitutive photomorphogenic 11.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.03 | 0.308 | 10.5 | -0.941 | 0.2 | 0.646 | -0.269 | -0.874 | -0.501 | 7.23 | 25.71 | 19 | -- | -- |
| 43.29 | 0.306 | 10.5 | -0.855 | 0.201 | 0.588 | -0.193 | -- | -0.48 | 7.54 | 25.85 | 18 | -- | -- |
| 43.2 | 0.306 | 10.5 | -0.936 | 0.199 | 0.644 | -- | -0.749 | -0.5 | 7.32 | 25.8 | 18 | -- | -- |
| 43.41 | 0.307 | 10.5 | -0.855 | 0.196 | 0.558 | -- | -- | -0.475 | 7.91 | 25.8 | 18 | -- | -- |
| 45.12 | 0.315 | 10.5 | -0.93 | -- | 0.612 | -- | -0.917 | -0.484 | -- | 26.26 | 14 | -- | -- |
| 47.96 | 0.325 | 10.5 | -0.776 | 0.237 | -- | 0.0551 | -- | -0.448 | 11.6 | -- | -- | -- | -- |
| 47.97 | 0.324 | 10.5 | -0.774 | 0.237 | -- | -- | -- | -0.448 | 11.5 | -- | -- | -- | -- |
| 45.37 | 0.314 | 10.5 | -0.847 | -- | 0.544 | -- | -- | -0.465 | -- | 26.22 | 8 | -- | -- |
| 61.93 | 0.369 | 10.5 | -- | 0.187 | 0.344 | -- | -- | -0.371 | 9.83 | 25.99 | 26 | -- | -- |
| 51.5 | 0.335 | 10.5 | -0.78 | -- | -- | -- | -- | -0.451 | -- | -- | -- | -- | -- |
| 63.75 | 0.373 | 10.5 | -- | 0.246 | -- | -- | -- | -0.362 | 11.7 | -- | -- | -- | -- |
| 63.92 | 0.372 | 10.5 | -- | -- | 0.418 | -- | -- | -0.368 | -- | 26.3 | 7 | -- | -- |
| 67.55 | 0.384 | 10.5 | -- | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 2 | 41.41 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 16 | 41.54 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 30 | 41.54 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 31 | 41.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 32 | 41.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 34 | 41.64 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 35 | 41.65 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 37 | 41.67 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 45 | 41.73 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 46 | 41.82 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 48 | 41.88 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 50 | 42.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 52 | 42.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 55 | 42.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 57 | 42.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 64 | 42.25 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 65 | 42.26 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 82 | 42.28 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 99 | 42.30 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 111 | 42.37 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 112 | 42.41 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 120 | 42.48 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 129 | 42.54 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 9 | 23 |
| 144 | 42.63 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 170 | 42.67 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 173 | 42.70 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 177 | 42.71 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 193 | 42.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 218 | 42.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 227 | 42.76 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 239 | 42.79 | atmosphere | 1000 | 270 | > th | dose independent | sin | 1 | NA |
| 246 | 42.80 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 255 | 42.81 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 18 |
| 258 | 42.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 261 | 42.82 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 262 | 42.82 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 270 | 42.83 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 284 | 42.83 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 312 | 42.86 | humidity | 70 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 357 | 42.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 424 | 42.96 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 426 | 42.96 | humidity | 80 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 439 | 42.98 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 5 | 17 |
| 456 | 42.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 459 | 43.00 | atmosphere | 1000 | 10 | > th | dose independent | sin | 23 | NA |
| 462 | 43.00 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 464 | 43.00 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 468 | 43.00 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 13 |
| 549 | 43.07 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 600 | 43.12 | temperature | 30 | 4320 | < th | dose independent | sin | 8 | NA |
| 633 | 43.15 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 639 | 43.16 | temperature | 30 | 4320 | > th | dose independent | sin | 8 | NA |
| 672 | 43.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 683 | 43.19 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 702 | 43.19 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 782 | 43.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 787 | 43.24 | humidity | 80 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 801 | 43.25 | atmosphere | 1000 | 270 | < th | dose independent | sin | 1 | NA |
| 804 | 43.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 812 | 43.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 819 | 43.26 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 836 | 43.27 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 20 | 16 |
| 859 | 43.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 899 | 43.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 900 | 43.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 969 | 43.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 978 | 43.34 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 4 | 8 |
| 998 | 43.36 | atmosphere | 1000 | 30 | < th | dose independent | sin | 23 | NA |