BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0109600 Os03g0109600|AK121478
         (175 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0109600  Similar to Transcription factor homolog BTF3-l...   309   8e-85
Os10g0483000  Similar to Transcription factor homolog BTF3-l...   262   8e-71
Os03g0851000  Similar to Transcription factor homolog BTF3-l...   230   4e-61
AY224531                                                          206   5e-54

>Os03g0109600 Similar to Transcription factor homolog BTF3-like protein
          Length = 175

 Score =  309 bits (791), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 60
           MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF
Sbjct: 1   MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 60

Query: 61  KDDVVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQ 120
           KDDVVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQ
Sbjct: 61  KDDVVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQ 120

Query: 121 KQVPGAEAGASAGNAQDDDDDVPELVPGETF 151
           KQVPGAEAGASAGNAQDDDDDVPELVPGETF
Sbjct: 121 KQVPGAEAGASAGNAQDDDDDVPELVPGETF 151



>Os10g0483000 Similar to Transcription factor homolog BTF3-like protein
          Length = 164

 Score =  262 bits (670), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 143/154 (92%), Positives = 145/154 (94%), Gaps = 3/154 (1%)

Query: 1   MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 60
           MNVDKLKKMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRVGVN IPGIEEVNIF
Sbjct: 1   MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIF 60

Query: 61  KDDVVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQ 120
           KDDVVIQF NPKVQASIGANTWVVSGTPQTKKLQDLLP+IINQLGPDNLDNLRRLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNLRRLAEQFQ 120

Query: 121 KQVP---GAEAGASAGNAQDDDDDVPELVPGETF 151
           KQ P   G EAGASAG AQ DDDDVPELVPGETF
Sbjct: 121 KQAPGASGEEAGASAGAAQGDDDDVPELVPGETF 154



>Os03g0851000 Similar to Transcription factor homolog BTF3-like protein
          Length = 158

 Score =  230 bits (586), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 118/151 (78%), Positives = 135/151 (89%), Gaps = 2/151 (1%)

Query: 1   MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 60
           MN ++L KMAGAVRTGGKG++RRKKKAVHKT TTDDKRLQSTLKRVGVN IP IEEVNIF
Sbjct: 1   MNKERLMKMAGAVRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIF 60

Query: 61  KDDVVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQ 120
           KDD+VIQF NPKVQASI ANTWVVSG+PQTKKLQD+LP IINQLGPDN+++L+R+AE+ Q
Sbjct: 61  KDDLVIQFVNPKVQASIAANTWVVSGSPQTKKLQDVLPGIINQLGPDNMEHLKRIAEEMQ 120

Query: 121 KQVPGAEAGASAGNAQDDDDDVPELVPGETF 151
           KQV  A AGA+A   +++DDDVPELVPGE F
Sbjct: 121 KQV--AAAGATAQAKEENDDDVPELVPGENF 149



>AY224531 
          Length = 119

 Score =  206 bits (525), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 104/119 (87%), Positives = 107/119 (89%)

Query: 1   MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 60
           MNVDKLKKMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRVGVN IPGIEEVNIF
Sbjct: 1   MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIF 60

Query: 61  KDDVVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQF 119
           KDDVVIQF NPKVQASIGANTWVVSGTPQTKKLQDLLP+IINQLGP +     R    F
Sbjct: 61  KDDVVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPAHSSPEERRHHPF 119



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,411,174
Number of extensions: 215441
Number of successful extensions: 689
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 687
Number of HSP's successfully gapped: 4
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 152 (63.2 bits)