BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0108000 Os03g0108000|AK102520
         (146 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0108000  Similar to Dual specificity phosphatase Cdc25 ...   302   6e-83
Os10g0545700  Similar to Dual specificity phosphatase Cdc25 ...   210   3e-55

>Os03g0108000 Similar to Dual specificity phosphatase Cdc25 (EC 3.1.3.48) (Arath
          Length = 146

 Score =  302 bits (773), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   PIKHRVPSLTRPAAAAMARGVSYVSAAQLVPMLRDPRIAVVDVRDEERIYDAHIAGSHHY 60
           PIKHRVPSLTRPAAAAMARGVSYVSAAQLVPMLRDPRIAVVDVRDEERIYDAHIAGSHHY
Sbjct: 1   PIKHRVPSLTRPAAAAMARGVSYVSAAQLVPMLRDPRIAVVDVRDEERIYDAHIAGSHHY 60

Query: 61  ASDSFGERLPELAQATKGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLE 120
           ASDSFGERLPELAQATKGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLE
Sbjct: 61  ASDSFGERLPELAQATKGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLE 120

Query: 121 RGFNGWELSGRPVCRCKDAPCKGVCS 146
           RGFNGWELSGRPVCRCKDAPCKGVCS
Sbjct: 121 RGFNGWELSGRPVCRCKDAPCKGVCS 146



>Os10g0545700 Similar to Dual specificity phosphatase Cdc25 (EC 3.1.3.48) (Arath
          Length = 160

 Score =  210 bits (535), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 113/134 (84%), Gaps = 1/134 (0%)

Query: 14  AAAMARGVSYVSAAQLVPMLR-DPRIAVVDVRDEERIYDAHIAGSHHYASDSFGERLPEL 72
           A  MAR VSYVSAA+L+ M R +PR+A++DVRDEER Y AHI GSHH++S SF  RLPEL
Sbjct: 21  AGRMARSVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQAHIGGSHHFSSRSFAARLPEL 80

Query: 73  AQATKGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLERGFNGWELSGRP 132
           A+AT  K+T+VFHCALSKVRGPSCA+M+ DYLSE  E+S  KNIMVLERGFNGWELSG+P
Sbjct: 81  ARATGDKDTVVFHCALSKVRGPSCAKMFSDYLSETKEESGTKNIMVLERGFNGWELSGQP 140

Query: 133 VCRCKDAPCKGVCS 146
           VCRC DAPCKG CS
Sbjct: 141 VCRCTDAPCKGTCS 154



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,228,938
Number of extensions: 203567
Number of successful extensions: 547
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 55
Effective length of database: 12,284,327
Effective search space: 675637985
Effective search space used: 675637985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)