BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0104000 Os03g0104000|AK063829
         (40 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0104000  Similar to Centromere protein                        86   4e-18
Os03g0161100  KIP1-like domain containing protein                  65   8e-12

>Os03g0104000 Similar to Centromere protein
          Length = 40

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/40 (100%), Positives = 40/40 (100%)

Query: 1  MAALVGHDARQYSWWWVSHISPKNSKWLQENLNGGVFFCV 40
          MAALVGHDARQYSWWWVSHISPKNSKWLQENLNGGVFFCV
Sbjct: 1  MAALVGHDARQYSWWWVSHISPKNSKWLQENLNGGVFFCV 40



>Os03g0161100 KIP1-like domain containing protein
          Length = 2753

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/34 (79%), Positives = 30/34 (88%), Gaps = 2/34 (5%)

Query: 1   MAALVGHDAR--QYSWWWVSHISPKNSKWLQENL 32
           MA+LV HD+   QYSWWWVSHISPKNSKWLQEN+
Sbjct: 192 MASLVRHDSNPTQYSWWWVSHISPKNSKWLQENV 225



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.134    0.507 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,639,693
Number of extensions: 38094
Number of successful extensions: 149
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 40
Length of database: 17,035,801
Length adjustment: 14
Effective length of query: 26
Effective length of database: 16,304,805
Effective search space: 423924930
Effective search space used: 423924930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)