Os03g0104000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Centromere protein.
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Os03g0104000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Centromere protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.83 | 0.307 | 9.79 | 0.583 | 0.838 | -0.888 | 0.414 | -0.636 | 0.528 | 23.1 | 36.72 | 7683 | -- | -- |
| 43.16 | 0.306 | 9.81 | 0.459 | 0.837 | -0.823 | 0.424 | -- | 0.509 | 23 | 60.26 | 7035 | -- | -- |
| 43.55 | 0.307 | 9.79 | 0.569 | 0.833 | -0.897 | -- | -0.67 | 0.525 | 23.2 | 58.5 | 7729 | -- | -- |
| 43.91 | 0.309 | 9.81 | 0.441 | 0.843 | -0.822 | -- | -- | 0.502 | 23.1 | 35.47 | 7197 | -- | -- |
| 73.49 | 0.399 | 9.78 | 0.615 | -- | -1.33 | -- | -0.491 | 0.546 | -- | 81.05 | 858 | -- | -- |
| 54.63 | 0.347 | 9.76 | 0.875 | 0.865 | -- | 0.451 | -- | 0.721 | 23.1 | -- | -- | -- | -- |
| 55.49 | 0.349 | 9.76 | 0.856 | 0.863 | -- | -- | -- | 0.719 | 23.2 | -- | -- | -- | -- |
| 73.68 | 0.4 | 9.79 | 0.517 | -- | -1.33 | -- | -- | 0.516 | -- | 111.4 | 861 | -- | -- |
| 45.5 | 0.314 | 9.85 | -- | 0.843 | -0.923 | -- | -- | 0.359 | 23.1 | 38.62 | 37233 | -- | -- |
| 101.95 | 0.472 | 9.74 | 0.877 | -- | -- | -- | -- | 0.727 | -- | -- | -- | -- | -- |
| 74.82 | 0.405 | 9.79 | -- | 0.871 | -- | -- | -- | 0.624 | 23.2 | -- | -- | -- | -- |
| 79.95 | 0.416 | 9.81 | -- | -- | -1.54 | -- | -- | 0.431 | -- | 116.1 | 875 | -- | -- |
| 122.24 | 0.516 | 9.77 | -- | -- | -- | -- | -- | 0.629 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.53 | temperature | 15 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 4 | 43.61 | temperature | 30 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 8 | 43.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 10 | 43.73 | temperature | 25 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 33 | 43.86 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 52 | 43.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 9 |
| 59 | 43.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 71 | 43.93 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 74 | 43.93 | temperature | 15 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 139 | 43.99 | temperature | 25 | 14400 | > th | dose independent | rect. | 15 | 10 |
| 156 | 44.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 169 | 44.01 | temperature | 30 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 187 | 44.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 202 | 44.02 | temperature | 25 | 4320 | < th | dose dependent | rect. | 6 | 18 |
| 203 | 44.03 | temperature | 25 | 14400 | < th | dose independent | sin | 15 | NA |
| 218 | 44.04 | temperature | 25 | 4320 | > th | dose independent | sin | 0 | NA |
| 220 | 44.04 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 228 | 44.04 | temperature | 15 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 240 | 44.05 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 244 | 44.05 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 13 |
| 255 | 44.06 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 299 | 44.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 321 | 44.09 | temperature | 25 | 14400 | > th | dose independent | sin | 15 | NA |
| 323 | 44.09 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 335 | 44.09 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 348 | 44.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 20 |
| 404 | 44.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 405 | 44.12 | temperature | 25 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 437 | 44.13 | temperature | 15 | 14400 | > th | dose dependent | sin | 12 | NA |
| 451 | 44.14 | temperature | 25 | 4320 | < th | dose independent | sin | 0 | NA |
| 478 | 44.15 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 479 | 44.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 490 | 44.15 | temperature | 25 | 4320 | < th | dose dependent | sin | 1 | NA |
| 520 | 44.16 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 18 |
| 545 | 44.17 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 622 | 44.18 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 21 |
| 660 | 44.19 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 21 |
| 664 | 44.19 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 22 |
| 680 | 44.20 | temperature | 25 | 14400 | < th | dose dependent | sin | 10 | NA |
| 707 | 44.20 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 18 |
| 719 | 44.20 | temperature | 30 | 4320 | < th | dose dependent | rect. | 14 | 23 |
| 761 | 44.21 | temperature | 30 | 4320 | < th | dose dependent | rect. | 14 | 21 |
| 762 | 44.21 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 22 |
| 773 | 44.21 | temperature | 30 | 4320 | < th | dose dependent | rect. | 12 | 23 |
| 777 | 44.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 790 | 44.22 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 811 | 44.22 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 20 |
| 819 | 44.22 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 22 |
| 841 | 44.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 15 |
| 854 | 44.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 10 |
| 876 | 44.23 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 21 |
| 883 | 44.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 892 | 44.24 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 904 | 44.24 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |