BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0104000 Os03g0104000|AK063829
         (40 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03080.1  | chr1:731794-737332 REVERSE LENGTH=1734              61   1e-10
AT4G02710.1  | chr4:1193516-1197061 REVERSE LENGTH=1112            51   1e-07
AT3G22790.1  | chr3:8052446-8057888 REVERSE LENGTH=1729            49   7e-07
AT4G14760.1  | chr4:8475718-8481094 FORWARD LENGTH=1711            48   1e-06

>AT1G03080.1 | chr1:731794-737332 REVERSE LENGTH=1734
          Length = 1733

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/32 (71%), Positives = 28/32 (87%)

Query: 1  MAALVGHDARQYSWWWVSHISPKNSKWLQENL 32
          M A+V  ++++YSWWW SHISPKNSKWLQENL
Sbjct: 1  MTAVVNGNSKRYSWWWDSHISPKNSKWLQENL 32



>AT4G02710.1 | chr4:1193516-1197061 REVERSE LENGTH=1112
          Length = 1111

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/23 (78%), Positives = 20/23 (86%)

Query: 10 RQYSWWWVSHISPKNSKWLQENL 32
          R YSWWW SH +PKNSKWLQ+NL
Sbjct: 11 RMYSWWWDSHNTPKNSKWLQDNL 33



>AT3G22790.1 | chr3:8052446-8057888 REVERSE LENGTH=1729
          Length = 1728

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 28/34 (82%), Gaps = 2/34 (5%)

Query: 1  MAALVGHDARQ-YSWWWVSHISPKNSKWLQENLN 33
          MA ++  ++R+ YSWWW SHI PKNSKW+Q+NL+
Sbjct: 1  MATVLHSESRRLYSWWWDSHI-PKNSKWIQQNLS 33



>AT4G14760.1 | chr4:8475718-8481094 FORWARD LENGTH=1711
          Length = 1710

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 26/33 (78%), Gaps = 2/33 (6%)

Query: 1  MAALVGHDA-RQYSWWWVSHISPKNSKWLQENL 32
          MA+L   ++ R YSWWW SHI PKNSKW+Q+NL
Sbjct: 1  MASLSQSESGRLYSWWWDSHI-PKNSKWIQDNL 32



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.134    0.507 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,032,034
Number of extensions: 23531
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 4
Length of query: 40
Length of database: 11,106,569
Length adjustment: 14
Effective length of query: 26
Effective length of database: 10,722,745
Effective search space: 278791370
Effective search space used: 278791370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)