BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0102400 Os03g0102400|AK121721
(493 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0102400 Conserved hypothetical protein 885 0.0
Os07g0466200 Conserved hypothetical protein 794 0.0
AK106501 450 e-126
>Os03g0102400 Conserved hypothetical protein
Length = 493
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/493 (88%), Positives = 435/493 (88%)
Query: 1 REGRGAIDQTTMVRAASGADPPPFLQTRMVDMXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
REGRGAIDQTTMVRAASGADPPPFLQTRMVDM
Sbjct: 1 REGRGAIDQTTMVRAASGADPPPFLQTRMVDMPSSSSSSSSSLSQSQSQSHSHSQTHKEK 60
Query: 61 XXXXXXXXXXXXXXXXXXRNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPN 120
RNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPN
Sbjct: 61 EKEKEKEEEQEEEKPSPSRNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPN 120
Query: 121 HVXXXXXXXXXXXXVDNSLLDVSQSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVP 180
HV VDNSLLDVSQSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVP
Sbjct: 121 HVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVP 180
Query: 181 LVVLVCGTACTGKSTIATQLAGRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFDSP 240
LVVLVCGTACTGKSTIATQLAGRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFDSP
Sbjct: 181 LVVLVCGTACTGKSTIATQLAGRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFDSP 240
Query: 241 EELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEEKRDDNSKMEKK 300
EELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEEKRDDNSKMEKK
Sbjct: 241 EELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEEKRDDNSKMEKK 300
Query: 301 VAESENSPATVKSKTEKQQENELHEKRMDDSQECMSEEGRISEGLSCAKSHVISSSDPAC 360
VAESENSPATVKSKTEKQQENELHEKRMDDSQECMSEEGRISEGLSCAKSHVISSSDPAC
Sbjct: 301 VAESENSPATVKSKTEKQQENELHEKRMDDSQECMSEEGRISEGLSCAKSHVISSSDPAC 360
Query: 361 SKEKNPRAEGEGHKDLDLQKNNATKKDKPAAKPIIVPIVLRMSDFDHKALLEEWIATRAS 420
SKEKNPRAEGEGHKDLDLQKNNATKKDKPAAKPIIVPIVLRMSDFDHKALLEEWIATRAS
Sbjct: 361 SKEKNPRAEGEGHKDLDLQKNNATKKDKPAAKPIIVPIVLRMSDFDHKALLEEWIATRAS 420
Query: 421 RDNCLPQDHRKLINNLKLIQDYLCSFESQGLTVVDISANSFPQTLDWLHSYLLQCIERGL 480
RDNCLPQDHRKLINNLKLIQDYLCSFESQGLTVVDISANSFPQTLDWLHSYLLQCIERGL
Sbjct: 421 RDNCLPQDHRKLINNLKLIQDYLCSFESQGLTVVDISANSFPQTLDWLHSYLLQCIERGL 480
Query: 481 LAACSESPKQGGS 493
LAACSESPKQGGS
Sbjct: 481 LAACSESPKQGGS 493
>Os07g0466200 Conserved hypothetical protein
Length = 484
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/478 (83%), Positives = 404/478 (84%), Gaps = 14/478 (2%)
Query: 1 REGRGAIDQTTMVRAASGADPPPFLQTRMVDMXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
REGRGAID MVRA +GADPPPFLQTRM DM
Sbjct: 12 REGRGAID---MVRAPAGADPPPFLQTRM-DMAASSSSSSLSQSHSQSQTQAHKVEEEEH 67
Query: 61 XXXXXXXXXXXXXXXXXXRNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPN 120
RNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPN
Sbjct: 68 AADPPSPS----------RNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPN 117
Query: 121 HVXXXXXXXXXXXXVDNSLLDVSQSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVP 180
HV VDNSLLDVSQSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVP
Sbjct: 118 HVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVP 177
Query: 181 LVVLVCGTACTGKSTIATQLAGRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFDSP 240
LVVLVCGTACTGKSTIATQLAGRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFDSP
Sbjct: 178 LVVLVCGTACTGKSTIATQLAGRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFDSP 237
Query: 241 EELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEEKRDDNSKMEKK 300
EELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIY MDEEKRDDNSKMEKK
Sbjct: 238 EELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYFMDEEKRDDNSKMEKK 297
Query: 301 VAESENSPATVKSKTEKQQENELHEKRMDDSQECMSEEGRISEGLSCAKSHVISSSDPAC 360
VAE E SPA+V+SKTE+QQENELHEKRMDDSQECMSEEG ISEGLSCAKSHVISSSD A
Sbjct: 298 VAECEQSPASVESKTERQQENELHEKRMDDSQECMSEEGGISEGLSCAKSHVISSSDSAY 357
Query: 361 SKEKNPRAEGEGHKDLDLQKNNATKKDKPAAKPIIVPIVLRMSDFDHKALLEEWIATRAS 420
SKEKNPRAE EGHKDLDLQKNN TKKDKPAA+PI+VPIVLRMSDFDHKALLEEW ATRAS
Sbjct: 358 SKEKNPRAEDEGHKDLDLQKNNTTKKDKPAAEPIVVPIVLRMSDFDHKALLEEWTATRAS 417
Query: 421 RDNCLPQDHRKLINNLKLIQDYLCSFESQGLTVVDISANSFPQTLDWLHSYLLQCIER 478
RDNCLPQDHRKLINNLKLIQDYLCSFESQGLTVVDISANSFPQTLDWLHSYLLQ E+
Sbjct: 418 RDNCLPQDHRKLINNLKLIQDYLCSFESQGLTVVDISANSFPQTLDWLHSYLLQVPEK 475
>AK106501
Length = 280
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/294 (77%), Positives = 230/294 (78%), Gaps = 14/294 (4%)
Query: 1 REGRGAIDQTTMVRAASGADPPPFLQTRMVDMXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
REGRGAID MVRA +GADPPPFLQTRM DM
Sbjct: 1 REGRGAID---MVRAPAGADPPPFLQTRM-DMAASSSSSSLSQSHSQSQTQAHKVEEEEH 56
Query: 61 XXXXXXXXXXXXXXXXXXRNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPN 120
RNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPN
Sbjct: 57 AADPPSPS----------RNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPN 106
Query: 121 HVXXXXXXXXXXXXVDNSLLDVSQSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVP 180
HV VDNSLLDVSQSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVP
Sbjct: 107 HVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVP 166
Query: 181 LVVLVCGTACTGKSTIATQLAGRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFDSP 240
LVVLVCGTACTGKSTIATQLAGRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFDSP
Sbjct: 167 LVVLVCGTACTGKSTIATQLAGRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFDSP 226
Query: 241 EELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEEKRDDN 294
EELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIY MDEEKRDDN
Sbjct: 227 EELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYFMDEEKRDDN 280
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,183,488
Number of extensions: 579266
Number of successful extensions: 2482
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2482
Number of HSP's successfully gapped: 4
Length of query: 493
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 388
Effective length of database: 11,553,331
Effective search space: 4482692428
Effective search space used: 4482692428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)