BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0101800 Os03g0101800|AK061186
(240 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0101800 Protein of unknown function Cys-rich family pr... 498 e-141
Os10g0560200 Protein of unknown function Cys-rich family pr... 349 1e-96
>Os03g0101800 Protein of unknown function Cys-rich family protein
Length = 240
Score = 498 bits (1281), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MAEEATLSHPSRYVKLSREHDAPAPAEDIRPGELNQPVHVPQLEGRRCSECGQVLPESYE 60
MAEEATLSHPSRYVKLSREHDAPAPAEDIRPGELNQPVHVPQLEGRRCSECGQVLPESYE
Sbjct: 1 MAEEATLSHPSRYVKLSREHDAPAPAEDIRPGELNQPVHVPQLEGRRCSECGQVLPESYE 60
Query: 61 PPADEPWTTGIFACTDDPQTCRTGLFCPCVLFGRNIEALREDIPWTTPCVCHAVFVEGGI 120
PPADEPWTTGIFACTDDPQTCRTGLFCPCVLFGRNIEALREDIPWTTPCVCHAVFVEGGI
Sbjct: 61 PPADEPWTTGIFACTDDPQTCRTGLFCPCVLFGRNIEALREDIPWTTPCVCHAVFVEGGI 120
Query: 121 ALAILTAIFHGVDPRTSFLIGEGLVFSWWLCGTYTGIFRQELQRKYHLKNSPCDPCMVHC 180
ALAILTAIFHGVDPRTSFLIGEGLVFSWWLCGTYTGIFRQELQRKYHLKNSPCDPCMVHC
Sbjct: 121 ALAILTAIFHGVDPRTSFLIGEGLVFSWWLCGTYTGIFRQELQRKYHLKNSPCDPCMVHC 180
Query: 181 CLHWCANCQEHRERTGRLAENSAVPMTVVNPPAVQEMSMAESRGPVSPGMENGAPSNSKG 240
CLHWCANCQEHRERTGRLAENSAVPMTVVNPPAVQEMSMAESRGPVSPGMENGAPSNSKG
Sbjct: 181 CLHWCANCQEHRERTGRLAENSAVPMTVVNPPAVQEMSMAESRGPVSPGMENGAPSNSKG 240
>Os10g0560200 Protein of unknown function Cys-rich family protein
Length = 235
Score = 349 bits (895), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 170/228 (74%), Positives = 189/228 (82%), Gaps = 3/228 (1%)
Query: 7 LSHPSRYVKLSREHDAPAPAEDIRPGELNQPVHVPQLEGRRCSECGQVLPESYEPPADEP 66
L HPSRYV+L+R+ DAPA EDIRPGELN P H PQLE RRC ECGQ LPESYE PADEP
Sbjct: 10 LGHPSRYVQLTRDQDAPA-DEDIRPGELNLPAHFPQLEQRRCCECGQQLPESYEAPADEP 68
Query: 67 WTTGIFACTDDPQTCRTGLFCPCVLFGRNIEALREDIPWTTPCVCHAVFVEGGIALAILT 126
WTTGI C +D ++C TG F PCVLFG N+EALREDIPWTTPC CHAV VEGGIALAILT
Sbjct: 69 WTTGICGCAEDTESCWTGSFFPCVLFGHNVEALREDIPWTTPCTCHAVCVEGGIALAILT 128
Query: 127 AIFHGVDPRTSFLIGEGLVFSWWLCGTYTGIFRQELQRKYHLKNSPCDPCMVHCCLHWCA 186
IF G+DP TS LIGEGLVFSWWL TYTGIFRQ+LQRKYHLK+SPCDPC+VHCCLHWCA
Sbjct: 129 VIFPGIDPSTSILIGEGLVFSWWLFATYTGIFRQQLQRKYHLKDSPCDPCLVHCCLHWCA 188
Query: 187 NCQEHRERTGRLAENSAVPMTVVNPPAVQEMSMAESRGPVSPGMENGA 234
NCQEHRER GRLA+N+A T+VNPP +QEMS+ + ++P ENGA
Sbjct: 189 NCQEHRERKGRLADNNANRNTIVNPPPMQEMSVVGNHPSITP--ENGA 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,780,519
Number of extensions: 446814
Number of successful extensions: 1096
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 4
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)