BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0832600 Os02g0832600|AK058645
         (351 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0832600  Conserved hypothetical protein                      565   e-161
Os09g0553700  Similar to PRLI-interacting factor A (Fragment)     187   1e-47

>Os02g0832600 Conserved hypothetical protein
          Length = 351

 Score =  565 bits (1457), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 286/351 (81%), Positives = 286/351 (81%)

Query: 1   MDPNQMMGRSFPMWXXXXXXXXXXXXXXXXXNRGWKRKNPSTAAGGYQPPALGDLQVQNR 60
           MDPNQMMGRSFPMW                 NRGWKRKNPSTAAGGYQPPALGDLQVQNR
Sbjct: 1   MDPNQMMGRSFPMWAAADDPSAQPPPFLPPPNRGWKRKNPSTAAGGYQPPALGDLQVQNR 60

Query: 61  AKARRWFKNQSXXXXXXXXPRKHFFPRPKAAAPRNTTSFIIRAKRAGGIASLVSPSPVTP 120
           AKARRWFKNQS        PRKHFFPRPKAAAPRNTTSFIIRAKRAGGIASLVSPSPVTP
Sbjct: 61  AKARRWFKNQSGGGGGGGGPRKHFFPRPKAAAPRNTTSFIIRAKRAGGIASLVSPSPVTP 120

Query: 121 AVLPTPRLSPSREGLSDMAQAQWGVDGYGSMKGLIRLRTSPHXXXXXXXXXXXXXXXXXV 180
           AVLPTPRLSPSREGLSDMAQAQWGVDGYGSMKGLIRLRTSPH                 V
Sbjct: 121 AVLPTPRLSPSREGLSDMAQAQWGVDGYGSMKGLIRLRTSPHPANPSDDDDDANSSGSDV 180

Query: 181 EEHVEVERRLDHDLSRFEMVYPARGDGVFFXXXXXXXXXXXAHVARLEEENLTLKERLFL 240
           EEHVEVERRLDHDLSRFEMVYPARGDGVFF           AHVARLEEENLTLKERLFL
Sbjct: 181 EEHVEVERRLDHDLSRFEMVYPARGDGVFFEEEDDYEYDQEAHVARLEEENLTLKERLFL 240

Query: 241 MEQELGDMRRRLEALESRFAGTDGMPIENSDAVAVDHDKEMAHPILVQRDDLRTEIXXXX 300
           MEQELGDMRRRLEALESRFAGTDGMPIENSDAVAVDHDKEMAHPILVQRDDLRTEI    
Sbjct: 241 MEQELGDMRRRLEALESRFAGTDGMPIENSDAVAVDHDKEMAHPILVQRDDLRTEIAADA 300

Query: 301 XXXXXXXXQDNAEEVADAAVSEKIVQDNADVVVAGSERTGEEIGVDASEMD 351
                   QDNAEEVADAAVSEKIVQDNADVVVAGSERTGEEIGVDASEMD
Sbjct: 301 AGSDKASAQDNAEEVADAAVSEKIVQDNADVVVAGSERTGEEIGVDASEMD 351



>Os09g0553700 Similar to PRLI-interacting factor A (Fragment)
          Length = 287

 Score =  187 bits (475), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 128/188 (68%), Gaps = 6/188 (3%)

Query: 90  AAAPRNTTSFIIRAKRAGGIASLVSPSPVTPAVLPTPRLSPSREGLSDMAQAQWGVDGYG 149
           AAAPRNTTS++IRAKRAGG+ASLVSP PVTPAVLPTP+LSP+RE + +MA+ +WGVDGYG
Sbjct: 72  AAAPRNTTSYLIRAKRAGGVASLVSPCPVTPAVLPTPQLSPAREVVVEMAKEKWGVDGYG 131

Query: 150 SMKGLIRLRTSPHXXXXXXXXXXXXXXXXXVEEHVEVERRLDHDLSRFEMV-YPARGDGV 208
           SMKGLIRLR S                   VEEHVEVERRLDHDLSRFEMV  P      
Sbjct: 132 SMKGLIRLR-SQAADAGGLPGEDSGSGESDVEEHVEVERRLDHDLSRFEMVQLPV--AAG 188

Query: 209 FFXXXXXXXXXXXAHVARLEEENLTLKERLFLMEQELGDMRRRLEALES--RFAGTDGMP 266
                        A  ARLEEENLTL+ERLFLME+++ D+RRRL A+E+  R    DG  
Sbjct: 189 DCEDDEDDDDGDEARTARLEEENLTLRERLFLMERDMDDLRRRLLAVETLCRDRHRDGCV 248

Query: 267 IENSDAVA 274
           ++ +  VA
Sbjct: 249 VDAAGVVA 256



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,357,543
Number of extensions: 417196
Number of successful extensions: 1576
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1572
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 249
Effective length of database: 11,709,973
Effective search space: 2915783277
Effective search space used: 2915783277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)