BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0819400 Os02g0819400|AK100921
(522 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0819400 Globin-like family protein 1041 0.0
Os09g0572200 Conserved hypothetical protein 530 e-151
>Os02g0819400 Globin-like family protein
Length = 522
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/522 (95%), Positives = 498/522 (95%)
Query: 1 YLIWSVCFSQGSRLGITTVVSTDSIRHMMRGFTDEKQNPLLYASTYHAGECLDPXXXXXX 60
YLIWSVCFSQGSRLGITTVVSTDSIRHMMRGFTDEKQNPLLYASTYHAGECLDP
Sbjct: 1 YLIWSVCFSQGSRLGITTVVSTDSIRHMMRGFTDEKQNPLLYASTYHAGECLDPVAVAQA 60
Query: 61 XXXXXXXXLDIVSHPNTNEGRDDTSDDKAHHGSSELPPRTELIGSKQMAIEGFKAQSEMV 120
LDIVSHPNTNEGRDDTSDDKAHHGSSELPPRTELIGSKQMAIEGFKAQSEMV
Sbjct: 61 KAKRKAQKLDIVSHPNTNEGRDDTSDDKAHHGSSELPPRTELIGSKQMAIEGFKAQSEMV 120
Query: 121 IDSLDRLITSWEEQKQSVIVEGVHLSLNFVMGLMKKHPSIIPFMVYIANEEKHMERFAVR 180
IDSLDRLITSWEEQKQSVIVEGVHLSLNFVMGLMKKHPSIIPFMVYIANEEKHMERFAVR
Sbjct: 121 IDSLDRLITSWEEQKQSVIVEGVHLSLNFVMGLMKKHPSIIPFMVYIANEEKHMERFAVR 180
Query: 181 AKYMTLDPAKNRYIKYIRNIRAIQDYLCNRADKHLVPKINNTNVDQSVAAIHATVFSCLR 240
AKYMTLDPAKNRYIKYIRNIRAIQDYLCNRADKHLVPKINNTNVDQSVAAIHATVFSCLR
Sbjct: 181 AKYMTLDPAKNRYIKYIRNIRAIQDYLCNRADKHLVPKINNTNVDQSVAAIHATVFSCLR 240
Query: 241 RREAGEQLYDLNTNTVAVVNEEYRNQRAANSLGSKGMFQLIQRQGSSRNLMAILNTDGSV 300
RREAGEQLYDLNTNTVAVVNEEYRNQRAANSLGSKGMFQLIQRQGSSRNLMAILNTDGSV
Sbjct: 241 RREAGEQLYDLNTNTVAVVNEEYRNQRAANSLGSKGMFQLIQRQGSSRNLMAILNTDGSV 300
Query: 301 TKAWHVDKNNGNGSLDGTSSDKSTKNPMYDTFGKAEPVNLQFGSFGISAWMSDTGGTSHT 360
TKAWHVDKNNGNGSLDGTSSDKSTKNPMYDTFGKAEPVNLQFGSFGISAWMSDTGGTSHT
Sbjct: 301 TKAWHVDKNNGNGSLDGTSSDKSTKNPMYDTFGKAEPVNLQFGSFGISAWMSDTGGTSHT 360
Query: 361 GSVDDLRADGIETGGRYYSSCCSSPKVSDCPSKELMEDDYSVFGSEEDADDPPDAGTDED 420
GSVDDLRADGIETGGRYYSSCCSSPKVSDCPSKELMEDDYSVFGSEEDADDPPDAGTDED
Sbjct: 361 GSVDDLRADGIETGGRYYSSCCSSPKVSDCPSKELMEDDYSVFGSEEDADDPPDAGTDED 420
Query: 421 LTDEERDMHEIEAGSVDEHSTKSDEEYDDLAMQDVMENGYWSDDEQAASSTKNSSNQEKN 480
LTDEERDMHEIEAGSVDEHSTKSDEEYDDLAMQDVMENGYWSDDEQAASSTKNSSNQEKN
Sbjct: 421 LTDEERDMHEIEAGSVDEHSTKSDEEYDDLAMQDVMENGYWSDDEQAASSTKNSSNQEKN 480
Query: 481 IHXXXXXXXXXXEGSGNDRFHHNLAFFLKMSKKVAATELPCA 522
IH EGSGNDRFHHNLAFFLKMSKKVAATELPCA
Sbjct: 481 IHGAADGDVVDDEGSGNDRFHHNLAFFLKMSKKVAATELPCA 522
>Os09g0572200 Conserved hypothetical protein
Length = 713
Score = 530 bits (1366), Expect = e-151, Method: Compositional matrix adjust.
Identities = 282/466 (60%), Positives = 345/466 (74%), Gaps = 22/466 (4%)
Query: 11 GSRLGITTVVSTDSIRHMMRGFTDEKQNPLLYASTYHAGECLDPXXXXXXXXXXXXXXLD 70
GSRLGITTVVSTDSIRHMMR F +EKQNPLL+ASTYHAGECLDP
Sbjct: 163 GSRLGITTVVSTDSIRHMMRSFVEEKQNPLLWASTYHAGECLDPVAVADAKARRKAKKRS 222
Query: 71 IVSHPNTNE-GRDDTSDDKAHHGSSELPPRTELIGSKQMAIEGFKAQSEMVIDSLDRLIT 129
+S +T + + +DK P + IG KQMAIEG+KAQSEMVIDSLDRLIT
Sbjct: 223 GISTTSTIDFDKTRPLNDK---------PDGKPIGKKQMAIEGYKAQSEMVIDSLDRLIT 273
Query: 130 SWEEQKQSVIVEGVHLSLNFVMGLMKKHPSIIPFMVYIANEEKHMERFAVRAKYMTLDPA 189
+WE++K+SV+VEGVHLSLNFVMGLM+KHPSIIPFM+YI++E KH ERFAVRAKYMTLDP
Sbjct: 274 AWEDRKESVVVEGVHLSLNFVMGLMRKHPSIIPFMIYISDEGKHTERFAVRAKYMTLDPT 333
Query: 190 KNRYIKYIRNIRAIQDYLCNRADKHLVPKINNTNVDQSVAAIHATVFSCLRRREAGEQLY 249
KN+Y+KYI NIR IQ+YLC+RADK+LVPK+NNTNVD+SVA+IHATVFSCLRRR AG+QLY
Sbjct: 334 KNKYVKYISNIRTIQEYLCSRADKYLVPKVNNTNVDRSVASIHATVFSCLRRRAAGDQLY 393
Query: 250 DLNTNTVAVVNEEYRNQRAANSLGSKGMFQLIQRQGSSRNLMAILNTDGSVTKAWHVDKN 309
D TNTVAVVNEEY+NQ ANS+ SKGMF+LIQR GSSR LMAI+N DGSV+KAW V+ +
Sbjct: 394 DPATNTVAVVNEEYKNQCVANSMSSKGMFKLIQRLGSSRKLMAIVNVDGSVSKAWPVESS 453
Query: 310 NGNGSLDG-TSSDKSTKNPMYDTF--GKAEPVNLQFGSFGISAWMSDTGGTSHTGSVDDL 366
+G+G S K +P+Y G+AE VNLQFG+FGISAW +D G TS GSV++
Sbjct: 454 SGDGKGGSENGSKKYVGDPIYGPLNIGRAESVNLQFGAFGISAWPTDAGCTSQAGSVNES 513
Query: 367 RADGIETGGRYYSSCCSSPKVSDCPSKELMEDDYSVFGSEEDADD-------PPDAGTDE 419
+ E G + S SPK D KE+ E + GS++D ++ PP++G++E
Sbjct: 514 WDNANEGTGSHVPSSSGSPKKLDGHCKEIKE-SAAASGSDDDEEEEEEAADVPPNSGSEE 572
Query: 420 DLTDEE-RDMHEIEAGSVDEHSTKSDEEYDDLAMQDVMENGYWSDD 464
DL++E+ R +HE GSVDE +SDEEYDDLAM+D MENG+ +DD
Sbjct: 573 DLSEEDIRAIHEEMEGSVDEDCNRSDEEYDDLAMRDCMENGFLTDD 618
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,982,847
Number of extensions: 795372
Number of successful extensions: 2796
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2791
Number of HSP's successfully gapped: 2
Length of query: 522
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 417
Effective length of database: 11,553,331
Effective search space: 4817739027
Effective search space used: 4817739027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)