BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0818000 Os02g0818000|AY346465
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0818000  CBS domain containing protein                       380   e-106
AY346466                                                          306   8e-84
Os04g0136700  CBS domain containing protein                       192   1e-49

>Os02g0818000 CBS domain containing protein
          Length = 187

 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   RPPATIFRCRASTFMDGSLRLEIDENPEAIISGEWPENFSLLSYDDLRAYLQSQEAAAQA 60
           RPPATIFRCRASTFMDGSLRLEIDENPEAIISGEWPENFSLLSYDDLRAYLQSQEAAAQA
Sbjct: 1   RPPATIFRCRASTFMDGSLRLEIDENPEAIISGEWPENFSLLSYDDLRAYLQSQEAAAQA 60

Query: 61  DNQRVALLSEAMSAPVLVATAEQTLEEVECHFETVSGLPVIDASLRCVGVIVKSDRARAS 120
           DNQRVALLSEAMSAPVLVATAEQTLEEVECHFETVSGLPVIDASLRCVGVIVKSDRARAS
Sbjct: 61  DNQRVALLSEAMSAPVLVATAEQTLEEVECHFETVSGLPVIDASLRCVGVIVKSDRARAS 120

Query: 121 HGSKTKIAEVMTSPAITLPSDKTVMDAAALMLKKKIHRLPIVNQDRQVIGIVTRADVLRE 180
           HGSKTKIAEVMTSPAITLPSDKTVMDAAALMLKKKIHRLPIVNQDRQVIGIVTRADVLRE
Sbjct: 121 HGSKTKIAEVMTSPAITLPSDKTVMDAAALMLKKKIHRLPIVNQDRQVIGIVTRADVLRE 180

Query: 181 LEALLEV 187
           LEALLEV
Sbjct: 181 LEALLEV 187



>AY346466 
          Length = 284

 Score =  306 bits (783), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 7   FRCRASTFMDGSLRLEIDENPEAIISGEWPENFSLLSYDDLRAYLQSQEAAAQADNQRVA 66
           FRCRASTFMDGSLRLEIDENPEAIISGEWPENFSLLSYDDLRAYLQSQEAAAQADNQRVA
Sbjct: 116 FRCRASTFMDGSLRLEIDENPEAIISGEWPENFSLLSYDDLRAYLQSQEAAAQADNQRVA 175

Query: 67  LLSEAMSAPVLVATAEQTLEEVECHFETVSGLPVIDASLRCVGVIVKSDRARASHGSKTK 126
           LLSEAMSAPVLVATAEQTLEEVECHFETVSGLPVIDASLRCVGVIVKSDRARASHGSKTK
Sbjct: 176 LLSEAMSAPVLVATAEQTLEEVECHFETVSGLPVIDASLRCVGVIVKSDRARASHGSKTK 235

Query: 127 IAEVMTSPAITLPSDKTVMDAAALMLKKK 155
           IAEVMTSPAITLPSDKTVMDAAALMLKKK
Sbjct: 236 IAEVMTSPAITLPSDKTVMDAAALMLKKK 264



>Os04g0136700 CBS domain containing protein
          Length = 220

 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 121/167 (72%), Gaps = 1/167 (0%)

Query: 17  GSLRLEIDENPEAIISGEWPENFSLLSYDDLRAYLQSQEAAAQADNQRVALLSEAMSAPV 76
           G LR  IDE PE I+SGEWPENFSLLSY DLRAYL+SQ           A L E MS  V
Sbjct: 52  GDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTD-QMSPTAKLGEVMSRLV 110

Query: 77  LVATAEQTLEEVECHFETVSGLPVIDASLRCVGVIVKSDRARASHGSKTKIAEVMTSPAI 136
            VA A+Q L +++  F   SGLPV+D   RC+GVI K D+A+AS+G  + + EVM+SPAI
Sbjct: 111 QVAMADQRLADIDAFFAAQSGLPVLDEEGRCIGVISKKDKAKASNGLDSTVGEVMSSPAI 170

Query: 137 TLPSDKTVMDAAALMLKKKIHRLPIVNQDRQVIGIVTRADVLRELEA 183
           TL  +KTV++AAALMLK+K+HR+P+VN+ +QVIGIVTR DV + LEA
Sbjct: 171 TLTPEKTVLEAAALMLKEKVHRIPVVNEQQQVIGIVTRTDVFKALEA 217



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,601,792
Number of extensions: 194825
Number of successful extensions: 603
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 3
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)