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Os02g0818000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CBS domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.0542) R2 : 0.5
β1 : -0.709 (0.223) R2dD : 0.0161 R2D : -0.0434
β2 : 1.68 (0.157) R2dC : 0.178 R2C : -0.0224
β3 : 2.19 (0.195) R2dE : 0.221 R2E : 0.133
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.65 (0.624) R2dD*E : 0.133 R2D*E : 0.199
γ1 : 0.719 (0.117) R2dN8 : 0.0645 R2N8 : 0.118
σ : 0.954
deviance : 419.18
__
_____
C
peak time of C : 18.4
E
wheather : temperature
threshold : 19.55
memory length : 916
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.47
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
409.97 0.951 13.7 -0.536 1.38 2.24 2.28 -4.7 0.74 18.8 19.5 963 3.6 --
450.92 0.989 13.5 0.0714 0.889 2.63 2.49 -- 0.861 18.9 19.5 1169 3.54 --
419.18 0.954 13.7 -0.709 1.68 2.19 -- -5.65 0.719 18.4 19.55 916 4.47 --
470.95 1.01 13.6 -0.0115 0.857 2.42 -- -- 0.768 16.2 19.34 1378 2.61 --
456.86 0.996 13.6 -0.352 -- 2.83 -- -2.6 0.843 -- 19.4 1158 1.42 --
609.35 1.16 13.4 1.06 0.901 -- 3.23 -- 1.4 17.3 -- -- -- --
631.7 1.18 13.4 1.06 0.943 -- -- -- 1.41 16.3 -- -- -- --
472.9 1.01 13.5 0.039 -- 3.14 -- -- 0.867 -- 19.39 1182 0.122 --
469.39 1.01 13.5 -- 0.809 2.6 -- -- 0.854 16.1 19.33 1369 1.22 --
679.57 1.22 13.4 1.02 -- -- -- -- 1.39 -- -- -- -- --
661.16 1.2 13.4 -- 0.923 -- -- -- 1.3 16.4 -- -- -- --
472.68 1.01 13.5 -- -- 3.13 -- -- 0.858 -- 19.4 1169 0.0421 --
707 1.24 13.4 -- -- -- -- -- 1.28 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 398.53 wind 9 43200 < th dose independent rect. 8 6
2 399.10 wind 9 43200 > th dose independent rect. 8 6
5 400.67 wind 9 43200 < th dose independent rect. 5 9
11 401.74 wind 9 43200 > th dose dependent rect. 10 4
29 403.82 wind 9 43200 > th dose independent rect. 20 20
41 404.35 wind 9 43200 > th dose independent rect. 23 17
49 404.75 wind 9 43200 > th dose independent rect. 20 18
78 406.31 wind 9 43200 > th dose independent sin 3 NA
80 406.48 wind 9 43200 < th dose independent rect. 20 20
85 406.82 wind 9 43200 < th dose independent sin 3 NA
98 408.35 wind 3 43200 > th dose independent rect. 6 6
100 408.40 wind 3 43200 < th dose independent rect. 6 6
131 410.85 wind 9 43200 > th dose independent rect. 10 2
136 411.00 temperature 20 1440 > th dose independent rect. 6 1
137 411.21 temperature 20 14400 < th dose independent rect. 20 2
139 411.48 wind 9 43200 > th dose dependent rect. 9 12
141 411.51 wind 9 43200 > th dose dependent rect. 10 22
143 411.56 wind 9 43200 > th dose dependent sin 21 NA
165 412.20 wind 9 43200 < th dose dependent rect. 6 1
170 412.36 wind 7 43200 > th dose dependent rect. 4 12
185 412.69 temperature 20 14400 > th dose independent rect. 20 2
212 413.25 wind 1 43200 > th dose dependent rect. 6 1
220 413.40 wind 7 43200 > th dose dependent rect. 23 17
223 413.51 wind 3 43200 > th dose independent rect. 1 13
225 413.57 wind 7 43200 > th dose dependent sin 3 NA
231 413.72 wind 3 43200 > th dose independent rect. 21 17
238 413.83 wind 3 43200 < th dose independent rect. 1 13
245 413.98 wind 9 43200 > th dose independent rect. 15 23
255 414.22 wind 3 43200 < th dose independent rect. 20 17
264 414.38 temperature 20 1440 < th dose independent rect. 22 1
298 414.98 wind 3 43200 > th dose independent sin 5 NA
315 415.31 wind 5 43200 < th dose dependent rect. 5 7
320 415.40 wind 1 43200 > th dose dependent rect. 5 7
322 415.42 atmosphere 995 43200 < th dose dependent rect. 11 15
324 415.46 wind 3 43200 < th dose independent sin 5 NA
329 415.52 wind 9 43200 < th dose dependent rect. 1 1
335 415.59 wind 9 43200 < th dose dependent rect. 21 11
340 415.67 wind 9 43200 < th dose dependent rect. 5 7
342 415.70 wind 5 43200 < th dose dependent rect. 21 11
343 415.72 wind 9 43200 < th dose independent rect. 10 2
362 415.96 wind 5 43200 < th dose dependent rect. 22 16
373 416.06 wind 3 43200 > th dose independent rect. 6 2
380 416.16 wind 9 43200 < th dose dependent rect. 22 16
384 416.19 wind 9 43200 > th dose independent rect. 4 23
385 416.20 temperature 20 1440 < th dose independent rect. 6 1
386 416.20 wind 9 43200 > th dose independent rect. 23 22
392 416.27 temperature 20 1440 > th dose independent rect. 22 1
400 416.35 wind 9 43200 > th dose independent rect. 4 20
411 416.45 wind 9 43200 > th dose independent rect. 12 23
415 416.46 wind 9 43200 > th dose independent rect. 1 23
423 416.51 wind 1 43200 > th dose dependent rect. 22 16
433 416.62 wind 9 43200 > th dose independent no NA NA
435 416.67 atmosphere 995 43200 < th dose independent rect. 1 14
498 417.22 wind 1 43200 > th dose dependent sin 5 NA
505 417.26 wind 3 43200 < th dose independent rect. 6 2
555 417.67 wind 9 43200 < th dose dependent sin 9 NA
562 417.71 wind 9 43200 < th dose dependent sin 6 NA
567 417.73 wind 1 43200 > th dose dependent rect. 20 12
571 417.76 wind 5 43200 < th dose dependent sin 6 NA
572 417.76 atmosphere 995 43200 < th dose dependent rect. 10 17
594 417.92 wind 9 43200 > th dose independent rect. 1 20
627 418.09 wind 1 43200 > th dose dependent rect. 1 14
631 418.12 wind 9 43200 > th dose independent rect. 4 17
640 418.16 atmosphere 995 43200 < th dose dependent rect. 11 22
643 418.18 wind 9 43200 < th dose dependent rect. 4 10
660 418.28 wind 5 43200 < th dose dependent rect. 1 13
661 418.29 atmosphere 995 43200 < th dose dependent sin 17 NA
671 418.35 wind 1 43200 > th dose dependent sin 9 NA
733 418.68 wind 9 43200 < th dose independent rect. 12 23
799 419.01 wind 9 43200 < th dose dependent rect. 1 13
816 419.12 wind 9 43200 < th dose independent rect. 1 23
819 419.13 wind 9 43200 > th dose dependent rect. 4 18
823 419.15 wind 1 43200 > th dose dependent rect. 18 18
835 419.20 atmosphere 995 43200 < th dose independent sin 5 NA
841 419.22 wind 9 43200 < th dose independent rect. 4 23
852 419.27 wind 9 43200 < th dose independent rect. 4 20
880 419.40 wind 9 43200 < th dose independent no NA NA
944 419.69 wind 3 43200 < th dose independent rect. 20 12
972 419.79 wind 9 43200 < th dose independent rect. 6 23
983 419.83 humidity 80 14400 > th dose dependent rect. 14 1