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Os04g0136700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CBS domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0412) R2 : 0.682
β1 : -1.73 (0.153) R2dD : 0.0945 R2D : 0.0776
β2 : 2.4 (0.0998) R2dC : 0.423 R2C : 0.467
β3 : -2.55 (0.205) R2dE : 0.124 R2E : 0.104
β4 : -3.09 (0.401) R2dD*C : 0.0445 R2D*C : 0.0314
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0242 (0.091) R2dN8 : 3.07e-05 R2N8 : -0.00202
σ : 0.762
deviance : 267.84
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C
peak time of C : 14.2
E
wheather : temperature
threshold : 26.66
memory length : 105
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.02
open length of G : 17.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
262.83 0.762 12.5 -1.87 2.46 -2.38 -3.24 2.15 -0.0324 14 27.47 108 0.983 16.5
267.84 0.762 12.5 -1.73 2.4 -2.55 -3.09 -- -0.0242 14.2 26.66 105 1.02 17.8
300.52 0.807 12.5 -1.89 2.45 -2.16 -- 1.94 -0.0121 14 27.04 106 0.733 16.7
303.53 0.811 12.6 -1.78 2.43 -2.32 -- -- -0.0442 14.1 26.71 131 0.501 17.8
629.46 1.17 12.6 -1.91 -- -2.84 -- 0.397 -0.0923 -- 27.04 106 0.733 16.7
339.53 0.864 12.5 -1.3 2.67 -- -2.93 -- 0.338 15 -- -- -- --
367.83 0.898 12.5 -1.36 2.65 -- -- -- 0.32 14.9 -- -- -- --
629.21 1.17 12.6 -1.87 -- -2.79 -- -- -0.0759 -- 27.47 42 0.629 16.8
380.34 0.908 12.5 -- 2.56 -1.8 -- -- 0.235 14.3 26.71 126 0.433 17.6
771.69 1.3 12.5 -1.47 -- -- -- -- 0.252 -- -- -- -- --
416.62 0.955 12.4 -- 2.68 -- -- -- 0.472 14.9 -- -- -- --
718.45 1.25 12.5 -- -- -2.4 -- -- 0.171 -- 27.6 25 0.444 17
828.96 1.34 12.4 -- -- -- -- -- 0.416 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.55 temperature 30 90 < th dose dependent rect. 1 16
2 270.31 temperature 30 90 < th dose dependent rect. 1 18
5 272.53 temperature 30 90 < th dose dependent rect. 1 14
7 272.64 temperature 25 90 < th dose dependent rect. 1 20
9 273.11 temperature 30 90 < th dose dependent rect. 3 14
10 273.65 temperature 30 30 < th dose dependent sin 4 NA
13 273.99 temperature 30 90 < th dose dependent rect. 3 16
23 274.81 temperature 30 90 < th dose dependent rect. 1 10
25 274.88 radiation 1 720 < th dose independent rect. 8 14
41 275.91 temperature 15 90 > th dose dependent sin 5 NA
53 276.59 temperature 20 10 > th dose dependent rect. 24 12
68 277.37 temperature 30 90 < th dose dependent rect. 3 12
110 278.78 radiation 1 720 < th dose independent rect. 8 22
138 279.63 radiation 1 720 < th dose dependent rect. 8 14
141 279.68 radiation 1 720 < th dose dependent rect. 1 22
167 280.28 temperature 15 270 > th dose dependent rect. 22 13
170 280.43 radiation 1 720 < th dose independent rect. 8 20
182 280.67 temperature 30 10 < th dose dependent rect. 1 11
184 280.74 temperature 30 10 < th dose dependent rect. 3 19
194 280.90 radiation 1 720 < th dose independent rect. 14 8
200 281.10 radiation 1 720 < th dose dependent rect. 8 22
203 281.21 radiation 1 720 > th dose independent rect. 13 6
224 281.38 radiation 10 720 < th dose dependent rect. 14 9
241 281.77 temperature 30 270 < th dose dependent rect. 24 6
248 281.97 radiation 1 720 > th dose independent rect. 7 12
261 282.02 temperature 30 10 < th dose dependent rect. 3 9
289 282.64 radiation 1 720 < th dose independent sin 20 NA
306 282.80 radiation 1 720 > th dose independent sin 15 NA
352 283.52 temperature 25 270 < th dose independent rect. 23 19
371 283.70 radiation 1 720 > th dose independent sin 20 NA
373 283.70 radiation 1 720 < th dose dependent rect. 3 18
381 283.79 radiation 1 720 < th dose independent rect. 1 22
419 284.44 radiation 1 720 < th dose dependent rect. 5 23
426 284.55 radiation 1 720 < th dose dependent rect. 3 23
429 284.62 radiation 1 720 < th dose dependent rect. 13 23
431 284.66 humidity 90 270 < th dose independent rect. 6 19
435 284.71 radiation 1 720 < th dose independent sin 15 NA
440 284.75 radiation 1 720 < th dose independent rect. 13 17
453 284.88 temperature 30 30 < th dose dependent rect. 5 14
462 285.00 radiation 1 720 > th dose independent rect. 13 22
464 285.06 radiation 1 720 < th dose dependent no NA NA
468 285.11 radiation 1 720 < th dose dependent sin 21 NA
556 286.16 radiation 1 720 < th dose dependent rect. 1 17
571 286.32 radiation 1 720 < th dose dependent rect. 13 17
591 286.64 radiation 1 720 < th dose dependent rect. 19 23
609 286.84 radiation 1 270 < th dose dependent sin 3 NA
611 286.90 radiation 1 720 > th dose independent rect. 15 4
678 287.56 radiation 1 720 < th dose dependent sin 14 NA
692 287.70 radiation 1 720 < th dose independent rect. 3 18
741 288.10 temperature 25 270 > th dose independent rect. 22 12
744 288.11 radiation 1 720 < th dose independent rect. 5 23
756 288.21 temperature 20 10 > th dose dependent rect. 7 5
838 289.20 radiation 1 720 < th dose independent rect. 3 23
847 289.33 radiation 1 720 < th dose independent rect. 13 23
851 289.38 radiation 1 720 < th dose independent no NA NA
856 289.41 temperature 15 270 > th dose dependent rect. 6 5
892 289.73 radiation 1 270 > th dose independent sin 2 NA
893 289.73 humidity 90 10 < th dose independent rect. 8 17
897 289.75 temperature 30 90 < th dose dependent rect. 3 4
901 289.79 temperature 10 90 > th dose dependent rect. 7 20
906 289.86 radiation 1 270 < th dose independent sin 3 NA
913 289.96 radiation 1 270 < th dose independent rect. 1 16
918 290.01 temperature 30 270 < th dose dependent rect. 3 1
934 290.15 radiation 1 720 > th dose independent no NA NA