BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0814300 Os02g0814300|AK111376
         (139 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0814300  Cytochrome c, monohaem domain containing protein    219   4e-58
Os02g0814400  Cytochrome c, monohaem domain containing protein    114   2e-26

>Os02g0814300 Cytochrome c, monohaem domain containing protein
          Length = 139

 Score =  219 bits (559), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/121 (88%), Positives = 107/121 (88%)

Query: 19  YPWPSDGAQRGRKVFMQSDCTACHGMFSSNAGLISDDDSAWEPKVAEIVVVEEAHQPVAA 78
           YPWPSDGAQRGRKVFMQSDCTACHGMFSSNAGLISDDDSAWEPKVAEIVVVEEAHQPVAA
Sbjct: 19  YPWPSDGAQRGRKVFMQSDCTACHGMFSSNAGLISDDDSAWEPKVAEIVVVEEAHQPVAA 78

Query: 79  AATLRGGAYYPAPDLTFIAKGLRGNNLYSGGGXXXXXXXXXXXXXXCQELKKRALASPVW 138
           AATLRGGAYYPAPDLTFIAKGLRGNNLYSGGG              CQELKKRALASPVW
Sbjct: 79  AATLRGGAYYPAPDLTFIAKGLRGNNLYSGGGASEAARMLADAAAACQELKKRALASPVW 138

Query: 139 L 139
           L
Sbjct: 139 L 139



>Os02g0814400 Cytochrome c, monohaem domain containing protein
          Length = 131

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 80/127 (62%), Gaps = 17/127 (13%)

Query: 19  YPWPSDGAQRGRKVFMQSDCTACHGMFSSNAGLISDDDSAW-----EPKVAEIVVVEEAH 73
           YPWP+DG QRGRKVFMQSDC ACH      AGL SDD +       EPK AEIVVVEEA 
Sbjct: 16  YPWPNDGVQRGRKVFMQSDCAACHTSLPY-AGL-SDDGARARAAAVEPKAAEIVVVEEAR 73

Query: 74  QPVAAAATLRGGAYYPAPDLTFIAK-GLRGNNLYSGGGXXXXXXXXXXXXXXCQELKKRA 132
           QP  AA T+ GGA   +PDLT I K GLRG NLY+                 CQELKKRA
Sbjct: 74  QP--AAETVNGGAN--SPDLTLITKQGLRG-NLYA----TAAPRMLAGAAAACQELKKRA 124

Query: 133 LASPVWL 139
           +ASPVWL
Sbjct: 125 MASPVWL 131



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,407,212
Number of extensions: 172609
Number of successful extensions: 416
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 2
Length of query: 139
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 49
Effective length of database: 12,336,541
Effective search space: 604490509
Effective search space used: 604490509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)