Os02g0814400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome c, monohaem domain containing protein.
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Os02g0814400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome c, monohaem domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.54 | 0.383 | 14 | -1.46 | 1.36 | -1.32 | -0.0437 | -2.71 | -0.697 | 21.7 | 1.132 | 1376 | -- | -- |
| 69.96 | 0.39 | 14 | -1.65 | 1.42 | -0.871 | 0.385 | -- | -0.735 | 21.7 | 2.949 | 1348 | -- | -- |
| 66.43 | 0.38 | 14 | -1.46 | 1.35 | -1.41 | -- | -2.92 | -0.71 | 21.7 | 0.9 | 1375 | -- | -- |
| 70.24 | 0.39 | 14 | -1.65 | 1.37 | -0.861 | -- | -- | -0.745 | 21.7 | 2.957 | 1350 | -- | -- |
| 116.48 | 0.503 | 14 | -1.47 | -- | -2.45 | -- | -3.09 | -0.789 | -- | 1.978 | 3973 | -- | -- |
| 77.99 | 0.414 | 14 | -1.54 | 1.57 | -- | 0.502 | -- | -0.646 | 21.9 | -- | -- | -- | -- |
| 78.96 | 0.416 | 14 | -1.56 | 1.57 | -- | -- | -- | -0.646 | 21.9 | -- | -- | -- | -- |
| 102.86 | 0.472 | 14 | -1.47 | -- | -2.27 | -- | -- | -0.939 | -- | 2.738 | 2540 | -- | -- |
| 129.23 | 0.529 | 14 | -- | 1.44 | -0.673 | -- | -- | -0.606 | 22.1 | 9.976 | 10846 | -- | -- |
| 226.07 | 0.703 | 14 | -1.54 | -- | -- | -- | -- | -0.647 | -- | -- | -- | -- | -- |
| 143.17 | 0.56 | 14 | -- | 1.56 | -- | -- | -- | -0.473 | 21.8 | -- | -- | -- | -- |
| 180.65 | 0.628 | 13.9 | -- | -- | 1 | -- | -- | -0.447 | -- | 2.738 | 2540 | -- | -- |
| 288.91 | 0.793 | 13.9 | -- | -- | -- | -- | -- | -0.475 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 64.70 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 6 | 64.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 7 | 64.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 33 | 66.09 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 47 | 66.40 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 69 | 66.44 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 110 | 66.52 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 116 | 66.54 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 121 | 66.55 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 130 | 66.55 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 134 | 66.56 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 173 | 66.62 | radiation | 1.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 184 | 66.62 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 210 | 66.70 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 223 | 66.81 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 224 | 66.81 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 256 | 66.84 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 260 | 66.85 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 305 | 66.91 | radiation | 1.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 319 | 66.92 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 340 | 66.95 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 344 | 66.95 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 348 | 66.96 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 349 | 66.96 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 354 | 66.97 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 355 | 66.97 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 365 | 66.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 367 | 66.98 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 390 | 67.03 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 394 | 67.04 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 395 | 67.04 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 413 | 67.09 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 416 | 67.09 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 420 | 67.09 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 432 | 67.10 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 439 | 67.11 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 448 | 67.12 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 476 | 67.15 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 484 | 67.16 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 510 | 67.21 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 514 | 67.22 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 528 | 67.24 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 529 | 67.24 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 539 | 67.26 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 574 | 67.32 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 578 | 67.33 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 634 | 67.40 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 643 | 67.41 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 705 | 67.50 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 5 |
| 713 | 67.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 732 | 67.54 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 743 | 67.55 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 18 |
| 749 | 67.56 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 756 | 67.58 | humidity | 80.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 811 | 67.62 | humidity | 80.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 874 | 67.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 882 | 67.68 | radiation | 1.0 | 720 | < th | dose independent | sin | 13 | NA |
| 904 | 67.69 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 906 | 67.69 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 908 | 67.70 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 958 | 67.73 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 983 | 67.75 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 8 |