Os02g0814300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome c, monohaem domain containing protein.
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Os02g0814300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome c, monohaem domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 375.53 | 0.91 | 5.36 | -4.3 | 1.84 | -2.94 | -2.32 | 3.33 | 0.195 | 11.8 | 0.2338 | 14426 | -- | -- |
| 385.08 | 0.914 | 5.21 | -3.64 | 1.9 | -3.5 | -1.98 | -- | 0.363 | 11.8 | 0.1961 | 14388 | -- | -- |
| 394.33 | 0.925 | 5.34 | -4.41 | 1.59 | -3.25 | -- | 3.58 | 0.218 | 11.1 | 0.06823 | 14787 | -- | -- |
| 406.38 | 0.939 | 5.26 | -3.9 | 1.89 | -3.74 | -- | -- | 0.275 | 11.8 | 0.2121 | 14404 | -- | -- |
| 487.71 | 1.03 | 5.33 | -3.78 | -- | -3.91 | -- | 4.05 | 0.366 | -- | 0.6024 | 4608 | -- | -- |
| 675.16 | 1.22 | 5.07 | -1.88 | 1.82 | -- | -2.47 | -- | 1.1 | 11.8 | -- | -- | -- | -- |
| 701.59 | 1.24 | 5.08 | -1.98 | 1.84 | -- | -- | -- | 1.08 | 11.7 | -- | -- | -- | -- |
| 505.86 | 1.05 | 5.28 | -3.37 | -- | -4.71 | -- | -- | 0.336 | -- | 0.7009 | 4559 | -- | -- |
| 677.97 | 1.21 | 5.12 | -- | 1.81 | -2.45 | -- | -- | 0.85 | 11.9 | 1.793 | 10133 | -- | -- |
| 913.54 | 1.41 | 5.12 | -2.03 | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
| 804.5 | 1.33 | 5.03 | -- | 1.86 | -- | -- | -- | 1.31 | 11.8 | -- | -- | -- | -- |
| 766.31 | 1.29 | 5.17 | -- | -- | -3.66 | -- | -- | 0.783 | -- | 1.83 | 4601 | -- | -- |
| 1022.15 | 1.49 | 5.07 | -- | -- | -- | -- | -- | 1.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 348.41 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 3 | 350.63 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 4 | 351.48 | wind | 5.0 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 7 | 351.94 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 10 | 352.19 | wind | 5.0 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 12 | 352.29 | wind | 5.0 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 13 | 352.30 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 15 | 352.73 | wind | 5.0 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 38 | 353.84 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 47 | 354.27 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 52 | 354.45 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 69 | 354.82 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 94 | 355.18 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 95 | 355.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 119 | 355.56 | wind | 5.0 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 166 | 356.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 167 | 356.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 180 | 356.47 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 194 | 356.66 | wind | 5.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 198 | 356.67 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 227 | 357.05 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 233 | 357.11 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 236 | 357.15 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 247 | 357.29 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 253 | 357.41 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 262 | 357.48 | wind | 5.0 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 268 | 357.55 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 304 | 358.11 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 305 | 358.12 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 370 | 358.88 | wind | 5.0 | 43200 | > th | dose independent | sin | 19 | NA |
| 381 | 359.08 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 401 | 359.20 | wind | 9.0 | 43200 | < th | dose dependent | sin | 20 | NA |
| 425 | 359.38 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 480 | 359.79 | wind | 1.0 | 43200 | > th | dose dependent | sin | 20 | NA |
| 543 | 360.15 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 556 | 360.23 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 628 | 360.58 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 714 | 360.85 | atmosphere | 1015.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 728 | 360.89 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 733 | 360.90 | atmosphere | 995.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 776 | 361.02 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 806 | 361.11 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 1 |