BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0794600 Os02g0794600|AK108336
         (79 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0794600  Similar to Copper chaperone COX17-1                 161   1e-40
Os09g0420700  Similar to Cox17p                                    99   6e-22

>Os02g0794600 Similar to Copper chaperone COX17-1
          Length = 79

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MGSTEHPIPAQSPACPTVSEGGSAAPAPATDSKPKKKICCACPDTKRLRDECIVEHGESA 60
          MGSTEHPIPAQSPACPTVSEGGSAAPAPATDSKPKKKICCACPDTKRLRDECIVEHGESA
Sbjct: 1  MGSTEHPIPAQSPACPTVSEGGSAAPAPATDSKPKKKICCACPDTKRLRDECIVEHGESA 60

Query: 61 CTKWIEAHKRCLRAEGFNV 79
          CTKWIEAHKRCLRAEGFNV
Sbjct: 61 CTKWIEAHKRCLRAEGFNV 79



>Os09g0420700 Similar to Cox17p
          Length = 73

 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 49/53 (92%)

Query: 27 APATDSKPKKKICCACPDTKRLRDECIVEHGESACTKWIEAHKRCLRAEGFNV 79
          AP  D+KPKKKICCACPDTK+LRDECIV+HGE AC KWIEAH++CLRAEGFNV
Sbjct: 21 APPADTKPKKKICCACPDTKKLRDECIVQHGEDACGKWIEAHRQCLRAEGFNV 73



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.130    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,622,788
Number of extensions: 157247
Number of successful extensions: 1107
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1107
Number of HSP's successfully gapped: 2
Length of query: 79
Length of database: 17,035,801
Length adjustment: 50
Effective length of query: 29
Effective length of database: 14,425,101
Effective search space: 418327929
Effective search space used: 418327929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)