Os09g0420700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cox17p.
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Os09g0420700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cox17p.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.46 | 0.242 | 10 | -0.347 | 0.285 | -0.68 | -0.229 | -0.118 | -0.277 | 10 | 32.19 | 30 | -- | -- |
| 26.44 | 0.241 | 10 | -0.362 | 0.272 | -0.678 | -0.196 | -- | -0.281 | 10.1 | 32.19 | 30 | -- | -- |
| 26.57 | 0.242 | 10 | -0.372 | 0.276 | -0.655 | -- | 0.0509 | -0.28 | 10.4 | 32.1 | 28 | -- | -- |
| 26.58 | 0.242 | 10 | -0.364 | 0.276 | -0.654 | -- | -- | -0.278 | 10.4 | 32.1 | 28 | -- | -- |
| 30.66 | 0.259 | 10 | -0.415 | -- | -0.831 | -- | 0.0668 | -0.309 | -- | 32.1 | 28 | -- | -- |
| 31.7 | 0.264 | 9.98 | -0.223 | 0.425 | -- | 0.0139 | -- | -0.17 | 12.1 | -- | -- | -- | -- |
| 31.7 | 0.264 | 9.98 | -0.222 | 0.425 | -- | -- | -- | -0.17 | 12 | -- | -- | -- | -- |
| 30.62 | 0.259 | 10 | -0.409 | -- | -0.778 | -- | -- | -0.323 | -- | 29.8 | 23 | -- | -- |
| 29.74 | 0.255 | 9.99 | -- | 0.308 | -0.497 | -- | -- | -0.215 | 11 | 32.1 | 28 | -- | -- |
| 43.1 | 0.307 | 9.99 | -0.236 | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
| 33.01 | 0.269 | 9.97 | -- | 0.428 | -- | -- | -- | -0.146 | 12.1 | -- | -- | -- | -- |
| 34.74 | 0.275 | 10 | -- | -- | -0.717 | -- | -- | -0.246 | -- | 32.1 | 28 | -- | -- |
| 44.56 | 0.312 | 9.98 | -- | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.31 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 3 | 24.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 18 | 25.05 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 19 | 25.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 30 | 25.37 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 31 | 25.37 | humidity | 60 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 81 | 25.75 | humidity | 80 | 90 | > th | dose independent | rect. | 22 | 21 |
| 104 | 25.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 129 | 25.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 159 | 26.04 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 160 | 26.05 | humidity | 80 | 10 | > th | dose independent | rect. | 23 | 21 |
| 194 | 26.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 230 | 26.28 | humidity | 50 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 231 | 26.28 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 18 |
| 245 | 26.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 256 | 26.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 268 | 26.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 293 | 26.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 320 | 26.50 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 339 | 26.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 348 | 26.58 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 356 | 26.59 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 15 |
| 374 | 26.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 397 | 26.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 398 | 26.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 428 | 26.75 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 435 | 26.75 | radiation | 20 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 439 | 26.76 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 463 | 26.79 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 14 |
| 469 | 26.80 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 475 | 26.81 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 506 | 26.83 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 18 |
| 517 | 26.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 552 | 26.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 562 | 26.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 569 | 26.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 570 | 26.92 | temperature | 15 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 577 | 26.93 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 585 | 26.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 600 | 26.95 | radiation | 10 | 270 | < th | dose dependent | rect. | 20 | 22 |
| 601 | 26.95 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 620 | 26.98 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 648 | 27.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 734 | 27.10 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 735 | 27.10 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 803 | 27.18 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 821 | 27.20 | radiation | 10 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 841 | 27.20 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 844 | 27.21 | temperature | 25 | 10 | < th | dose dependent | sin | 17 | NA |
| 853 | 27.22 | humidity | 90 | 90 | < th | dose independent | rect. | 8 | 14 |
| 855 | 27.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 15 |
| 871 | 27.24 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 874 | 27.24 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 14 |
| 882 | 27.25 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 892 | 27.26 | humidity | 80 | 10 | > th | dose independent | rect. | 23 | 15 |
| 894 | 27.26 | humidity | 50 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 909 | 27.27 | radiation | 10 | 270 | < th | dose independent | rect. | 21 | 20 |
| 912 | 27.27 | wind | 5 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 913 | 27.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 921 | 27.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 924 | 27.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 992 | 27.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |