BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0420700 Os09g0420700|AK111264
         (73 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15352.1  | chr3:5180266-5180490 FORWARD LENGTH=75              98   7e-22
AT1G53030.1  | chr1:19760224-19760442 REVERSE LENGTH=73            90   2e-19

>AT3G15352.1 | chr3:5180266-5180490 FORWARD LENGTH=75
          Length = 74

 Score = 98.2 bits (243), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 53/60 (88%)

Query: 14 STEKTEQAPPADTKPKKKICCACPDTKKLRDECIVQHGEDACGKWIEAHRQCLRAEGFNV 73
          ++E ++ A  A+TKPKK+ICCACPDTKKLRDECIV+HGE AC KWIEAH+ CLRAEGFNV
Sbjct: 15 TSEPSKAAASAETKPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHKICLRAEGFNV 74



>AT1G53030.1 | chr1:19760224-19760442 REVERSE LENGTH=73
          Length = 72

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 44/49 (89%)

Query: 25 DTKPKKKICCACPDTKKLRDECIVQHGEDACGKWIEAHRQCLRAEGFNV 73
          +TKPKK+ICCACPDTKKLRDECIV+HGE AC KWIEAH  CLR+EGF V
Sbjct: 24 ETKPKKRICCACPDTKKLRDECIVEHGESACTKWIEAHILCLRSEGFKV 72



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.128    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,777,229
Number of extensions: 60701
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 73
Length of database: 11,106,569
Length adjustment: 45
Effective length of query: 28
Effective length of database: 9,872,849
Effective search space: 276439772
Effective search space used: 276439772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)