BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0793700 Os02g0793700|AK062552
(102 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0793700 Cytochrome b5 domain containing protein 203 3e-53
Os03g0321000 Similar to Steroid membrane binding protein-like 125 7e-30
Os02g0640300 Similar to Membrane steroid binding protein 1 ... 117 3e-27
Os10g0502600 Cytochrome b5 domain containing protein 116 4e-27
Os10g0502500 Cytochrome b5 domain containing protein 115 9e-27
>Os02g0793700 Cytochrome b5 domain containing protein
Length = 102
Score = 203 bits (516), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MAAELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGK 60
MAAELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGK
Sbjct: 1 MAAELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGK 60
Query: 61 MSKDDADVSGDLSGLSDKELGVLADWETKFQAKYPVVARLTE 102
MSKDDADVSGDLSGLSDKELGVLADWETKFQAKYPVVARLTE
Sbjct: 61 MSKDDADVSGDLSGLSDKELGVLADWETKFQAKYPVVARLTE 102
>Os03g0321000 Similar to Steroid membrane binding protein-like
Length = 191
Score = 125 bits (314), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 72/97 (74%)
Query: 4 ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGKMSK 63
E+T QL AYDG DP+KPI +++RG+VYDVT GR FYGP G Y++FAGR+A+RAL MS
Sbjct: 81 EITLEQLAAYDGKDPAKPILIAIRGQVYDVTRGRLFYGPQGPYSLFAGRDATRALALMSF 140
Query: 64 DDADVSGDLSGLSDKELGVLADWETKFQAKYPVVARL 100
D D++GDL GL EL VL DWE KF+ +YP V L
Sbjct: 141 DPIDLTGDLDGLGPDELEVLQDWEDKFKERYPTVGHL 177
>Os02g0640300 Similar to Membrane steroid binding protein 1 (AtMP1)
Length = 333
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 71/91 (78%)
Query: 4 ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGKMSK 63
E+T +LR YDGSDP+KP+ ++++G++YDVT R FYGPGG YA+FAGR+ASRAL KMS
Sbjct: 69 EVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALAKMSF 128
Query: 64 DDADVSGDLSGLSDKELGVLADWETKFQAKY 94
+ D++GD+SGL EL L +WE KF +KY
Sbjct: 129 ELDDLTGDVSGLGPIELEALHEWEGKFMSKY 159
>Os10g0502600 Cytochrome b5 domain containing protein
Length = 232
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 69/91 (75%)
Query: 4 ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGKMSK 63
E++ +LR YDGSDP KP+ ++++G++YDVT R FYGPGG YA+FAG++ASRAL KMS
Sbjct: 73 EVSEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSF 132
Query: 64 DDADVSGDLSGLSDKELGVLADWETKFQAKY 94
+ D++GD+SGL EL L DWE KF KY
Sbjct: 133 EPQDLTGDISGLGPFELDALQDWEYKFMGKY 163
>Os10g0502500 Cytochrome b5 domain containing protein
Length = 265
Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 70/91 (76%)
Query: 4 ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGKMSK 63
E+TA +L YDGSDP KP+ ++++G++YDV+ R FYGPGG YA+FAG++ASRAL KMS
Sbjct: 120 EITAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALAKMSF 179
Query: 64 DDADVSGDLSGLSDKELGVLADWETKFQAKY 94
+ D++ D+SGLS EL L DWE KF +KY
Sbjct: 180 EPQDLTDDISGLSLLELSALQDWEYKFSSKY 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,649,451
Number of extensions: 149845
Number of successful extensions: 297
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 5
Length of query: 102
Length of database: 17,035,801
Length adjustment: 70
Effective length of query: 32
Effective length of database: 13,380,821
Effective search space: 428186272
Effective search space used: 428186272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)