FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0640300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Membrane steroid binding protein 1 (AtMP1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.52 (0.0571) R2 : 0.411
β1 : -1.92 (0.208) R2dD : 0.113 R2D : 0.0716
β2 : 1.21 (0.145) R2dC : 0.1 R2C : 0.0989
β3 : -1.56 (0.137) R2dE : 0.173 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.798 (0.122) R2dN8 : 0.0759 R2N8 : 0.00317
σ : 1.06
deviance : 522.29
__
_____
C
peak time of C : 7.99
E
wheather : humidity
threshold : 71.01
memory length : 27
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.57
open length of G : 22.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
494.69 1.04 5.52 -2.13 1.37 -1.69 2.73 2.1 -0.843 7.79 70.65 45 5.27 22.7
507.19 1.05 5.53 -1.98 1.33 -1.77 2.63 -- -0.837 7.27 71.05 33 5.45 22.6
515.3 1.06 5.52 -1.99 1.35 -1.69 -- 1.85 -0.856 7.78 71 41 5.33 22.7
522.29 1.06 5.52 -1.92 1.21 -1.56 -- -- -0.798 7.99 71.01 27 5.57 22.4
589.39 1.13 5.57 -1.85 -- -1.85 -- 0.991 -0.77 -- 72.55 21 5.78 22.1
605.98 1.15 5.47 -1.89 1.67 -- 1.18 -- -0.63 10.3 -- -- -- --
611.03 1.16 5.47 -1.84 1.66 -- -- -- -0.625 10.5 -- -- -- --
592.05 1.13 5.54 -1.92 -- -1.86 -- -- -0.753 -- 72.4 15 5.88 22.1
619.18 1.16 5.51 -- 1.25 -1.52 -- -- -0.7 8.11 71.34 24 5.62 22.5
779.39 1.3 5.51 -1.87 -- -- -- -- -0.631 -- -- -- -- --
700.4 1.24 5.42 -- 1.67 -- -- -- -0.419 10.6 -- -- -- --
688.34 1.22 5.52 -- -- -1.79 -- -- -0.546 -- 73.88 17 5.84 22.1
871.65 1.38 5.47 -- -- -- -- -- -0.424 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 502.57 humidity 70 30 > th dose dependent rect. 5 23
4 514.90 humidity 70 30 > th dose dependent rect. 22 18
9 516.68 humidity 70 10 > th dose dependent rect. 22 22
15 519.95 radiation 10 1440 > th dose independent rect. 11 1
17 520.33 humidity 70 10 > th dose dependent rect. 18 23
24 521.25 humidity 70 30 > th dose dependent rect. 9 23
37 522.48 radiation 1 720 < th dose dependent rect. 5 22
38 522.72 humidity 70 30 > th dose dependent rect. 7 23
39 523.02 humidity 70 10 > th dose dependent no NA NA
44 523.34 radiation 1 720 < th dose dependent rect. 22 18
45 523.41 humidity 70 10 > th dose dependent rect. 15 23
46 523.49 humidity 70 10 > th dose dependent rect. 11 23
57 524.27 humidity 70 30 > th dose dependent rect. 13 23
58 524.30 humidity 80 1440 > th dose independent rect. 11 3
62 524.78 humidity 70 10 > th dose dependent rect. 7 21
68 525.39 humidity 70 270 > th dose dependent rect. 7 21
69 525.43 humidity 80 1440 < th dose independent rect. 11 3
79 525.83 radiation 1 720 < th dose independent rect. 7 20
87 526.35 humidity 70 30 > th dose dependent rect. 9 19
88 526.44 radiation 1 720 < th dose dependent rect. 1 15
89 526.49 humidity 80 1440 > th dose dependent rect. 11 3
91 526.66 radiation 10 1440 < th dose dependent rect. 15 1
92 526.70 humidity 80 270 > th dose independent rect. 7 21
94 526.77 radiation 1 720 < th dose dependent rect. 20 23
96 526.94 humidity 80 1440 < th dose independent rect. 7 7
115 527.91 radiation 10 1440 < th dose dependent rect. 11 7
116 527.92 radiation 1 720 < th dose dependent rect. 17 23
122 528.22 radiation 1 720 < th dose independent rect. 5 22
139 528.94 radiation 10 1440 < th dose dependent rect. 11 17
148 529.08 radiation 10 1440 < th dose dependent rect. 11 9
150 529.10 radiation 10 1440 < th dose dependent rect. 11 14
151 529.11 humidity 80 1440 > th dose independent rect. 7 8
164 529.28 radiation 10 90 < th dose dependent rect. 5 23
199 530.10 radiation 1 720 > th dose independent rect. 17 23
209 530.32 radiation 1 720 < th dose dependent sin 4 NA
226 530.70 radiation 1 720 < th dose dependent rect. 5 16
233 530.81 humidity 70 10 > th dose dependent rect. 1 23
238 530.95 humidity 80 30 > th dose independent rect. 5 23
259 531.27 radiation 1 720 < th dose independent rect. 20 23
289 531.74 radiation 1 720 < th dose dependent no NA NA
300 531.99 humidity 80 30 > th dose independent rect. 22 22
302 532.03 humidity 80 30 < th dose independent rect. 7 13
315 532.21 humidity 80 30 > th dose independent rect. 22 19
328 532.30 radiation 1 720 > th dose independent sin 0 NA
330 532.31 radiation 1 720 < th dose dependent rect. 12 23
331 532.34 humidity 80 270 > th dose independent rect. 19 21
336 532.40 radiation 1 720 > th dose independent rect. 8 23
343 532.48 radiation 10 1440 < th dose dependent sin 17 NA
375 533.00 humidity 50 720 > th dose dependent rect. 15 8
383 533.12 humidity 80 30 < th dose independent rect. 7 11
387 533.17 humidity 50 720 > th dose dependent rect. 11 16
392 533.23 humidity 60 720 > th dose dependent rect. 18 3
410 533.46 humidity 90 10 < th dose dependent rect. 6 16
426 533.70 humidity 50 720 > th dose dependent rect. 15 6
436 533.96 radiation 1 720 < th dose independent rect. 7 13
438 533.98 humidity 50 720 > th dose dependent sin 17 NA
440 534.02 radiation 1 720 < th dose independent rect. 5 16
442 534.04 radiation 1 720 < th dose independent sin 23 NA
465 534.24 humidity 90 10 < th dose dependent rect. 4 18
467 534.25 humidity 50 720 > th dose dependent rect. 11 12
471 534.32 radiation 1 720 < th dose dependent sin 23 NA
484 534.43 radiation 1 720 < th dose dependent rect. 24 23
502 534.59 humidity 50 720 > th dose dependent rect. 9 18
513 534.75 radiation 1 720 < th dose independent rect. 17 23
524 534.83 radiation 1 1440 > th dose independent rect. 9 1
529 534.90 humidity 80 270 < th dose independent rect. 7 14
532 534.92 radiation 1 720 < th dose independent rect. 22 18
547 535.07 radiation 1 1440 > th dose independent rect. 9 3
558 535.18 humidity 80 30 < th dose independent rect. 24 20
567 535.25 humidity 50 720 > th dose dependent rect. 9 14
570 535.26 humidity 90 10 < th dose dependent rect. 2 20
611 535.59 radiation 1 1440 < th dose independent rect. 9 3
612 535.59 radiation 1 1440 < th dose dependent rect. 9 3
632 535.80 humidity 60 720 > th dose dependent rect. 18 1
643 535.86 radiation 1 1440 < th dose dependent rect. 7 10
653 535.95 radiation 1 720 < th dose independent no NA NA
687 536.29 wind 1 14400 > th dose independent rect. 1 2
697 536.33 radiation 10 1440 > th dose independent rect. 11 20
728 536.57 radiation 1 720 < th dose independent rect. 12 23
738 536.68 radiation 1 720 > th dose independent rect. 5 14
792 536.98 humidity 50 720 > th dose dependent rect. 13 14
811 537.07 humidity 70 720 > th dose independent rect. 14 14
837 537.20 atmosphere 1015 4320 < th dose independent rect. 8 3
839 537.22 radiation 1 720 > th dose independent rect. 8 8
843 537.25 atmosphere 1015 4320 < th dose independent rect. 7 5
846 537.26 atmosphere 1015 4320 > th dose independent rect. 8 3
853 537.29 radiation 1 720 > th dose independent no NA NA
904 537.32 atmosphere 1015 4320 > th dose independent rect. 7 5
910 537.34 humidity 70 720 > th dose independent rect. 15 12
912 537.35 humidity 80 30 < th dose independent sin 22 NA
922 537.39 atmosphere 1015 4320 > th dose dependent rect. 8 3
963 537.63 radiation 1 720 < th dose dependent rect. 5 18
987 537.77 humidity 80 1440 < th dose independent sin 2 NA
1000 537.81 radiation 1 720 < th dose independent rect. 24 23