BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0640300 Os02g0640300|AK069079
(333 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0640300 Similar to Membrane steroid binding protein 1 ... 575 e-164
Os10g0502600 Cytochrome b5 domain containing protein 199 3e-51
Os10g0502500 Cytochrome b5 domain containing protein 176 2e-44
Os03g0321000 Similar to Steroid membrane binding protein-like 149 2e-36
Os02g0793700 Cytochrome b5 domain containing protein 117 1e-26
Os03g0205500 Cytochrome b5 domain containing protein 69 4e-12
>Os02g0640300 Similar to Membrane steroid binding protein 1 (AtMP1)
Length = 333
Score = 575 bits (1482), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/333 (87%), Positives = 292/333 (87%)
Query: 1 MVXXXXXXXXXXXXYTGLSPXXXXXXXXXXXXXXXXXSGXXXXXXXXXXXXQEEARASQP 60
MV YTGLSP SG QEEARASQP
Sbjct: 1 MVAAAEWWEATIAAYTGLSPAAFFTAVAVAAALYVAVSGLLTRRPPPLPRRQEEARASQP 60
Query: 61 LPPPVQLGEVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDAS 120
LPPPVQLGEVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDAS
Sbjct: 61 LPPPVQLGEVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDAS 120
Query: 121 RALAKMSFELDDLTGDVSGLGPIELEALHEWEGKFMSKYVKVGTIKKIIPVSEGDAATHG 180
RALAKMSFELDDLTGDVSGLGPIELEALHEWEGKFMSKYVKVGTIKKIIPVSEGDAATHG
Sbjct: 121 RALAKMSFELDDLTGDVSGLGPIELEALHEWEGKFMSKYVKVGTIKKIIPVSEGDAATHG 180
Query: 181 GTSDRGIDVGTIESNRVPEPEENGATSHADAVEKSDADVSTHNHEDVVEKSDELLESGVD 240
GTSDRGIDVGTIESNRVPEPEENGATSHADAVEKSDADVSTHNHEDVVEKSDELLESGVD
Sbjct: 181 GTSDRGIDVGTIESNRVPEPEENGATSHADAVEKSDADVSTHNHEDVVEKSDELLESGVD 240
Query: 241 TRSTHEDAVGKPKEETEDADVQKTISTEVAGEGKGAPDEDDRNTCSLEDAIEKPKETAYI 300
TRSTHEDAVGKPKEETEDADVQKTISTEVAGEGKGAPDEDDRNTCSLEDAIEKPKETAYI
Sbjct: 241 TRSTHEDAVGKPKEETEDADVQKTISTEVAGEGKGAPDEDDRNTCSLEDAIEKPKETAYI 300
Query: 301 DVKDTSGHEVAGEPKEAPDVDGNNTSSNQDGSG 333
DVKDTSGHEVAGEPKEAPDVDGNNTSSNQDGSG
Sbjct: 301 DVKDTSGHEVAGEPKEAPDVDGNNTSSNQDGSG 333
>Os10g0502600 Cytochrome b5 domain containing protein
Length = 232
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 93/114 (81%), Positives = 102/114 (89%)
Query: 65 VQLGEVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALA 124
VQLGEV+EEELR YDGSDP KPLLMAIKGQIYDVTQSRMFYGPGGPYALFAG+DASRALA
Sbjct: 69 VQLGEVSEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 128
Query: 125 KMSFELDDLTGDVSGLGPIELEALHEWEGKFMSKYVKVGTIKKIIPVSEGDAAT 178
KMSFE DLTGD+SGLGP EL+AL +WE KFM KYVKVGT+KK +PV +G +T
Sbjct: 129 KMSFEPQDLTGDISGLGPFELDALQDWEYKFMGKYVKVGTVKKTVPVEDGAPST 182
>Os10g0502500 Cytochrome b5 domain containing protein
Length = 265
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 95/112 (84%)
Query: 65 VQLGEVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALA 124
VQ+GE+T EEL YDGSDP KPLLMAIKGQIYDV+QSR+FYGPGGPYALFAG+DASRALA
Sbjct: 116 VQVGEITAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALA 175
Query: 125 KMSFELDDLTGDVSGLGPIELEALHEWEGKFMSKYVKVGTIKKIIPVSEGDA 176
KMSFE DLT D+SGL +EL AL +WE KF SKYVKVGTIKK++ GD+
Sbjct: 176 KMSFEPQDLTDDISGLSLLELSALQDWEYKFSSKYVKVGTIKKVLVEQGGDS 227
>Os03g0321000 Similar to Steroid membrane binding protein-like
Length = 191
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 93/130 (71%), Gaps = 6/130 (4%)
Query: 55 ARASQPLPPPVQLGEVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALF 114
A A P P PVQ+GE+T E+L YDG DP KP+L+AI+GQ+YDVT+ R+FYGP GPY+LF
Sbjct: 67 AGAFVPYPDPVQVGEITLEQLAAYDGKDPAKPILIAIRGQVYDVTRGRLFYGPQGPYSLF 126
Query: 115 AGRDASRALAKMSFELDDLTGDVSGLGPIELEALHEWEGKFMSKYVKVGTIKKIIPVSEG 174
AGRDA+RALA MSF+ DLTGD+ GLGP ELE L +WE KF +Y VG + SE
Sbjct: 127 AGRDATRALALMSFDPIDLTGDLDGLGPDELEVLQDWEDKFKERYPTVGHLA-----SEN 181
Query: 175 DA-ATHGGTS 183
A HGG +
Sbjct: 182 AADGNHGGAA 191
>Os02g0793700 Cytochrome b5 domain containing protein
Length = 102
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 71/91 (78%)
Query: 69 EVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALAKMSF 128
E+T +LR YDGSDP+KP+ ++++G++YDVT R FYGPGG YA+FAGR+ASRAL KMS
Sbjct: 4 ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRALGKMSK 63
Query: 129 ELDDLTGDVSGLGPIELEALHEWEGKFMSKY 159
+ D++GD+SGL EL L +WE KF +KY
Sbjct: 64 DDADVSGDLSGLSDKELGVLADWETKFQAKY 94
>Os03g0205500 Cytochrome b5 domain containing protein
Length = 305
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 17/110 (15%)
Query: 71 TEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALAKMSF-- 128
T+EEL VY+G+D + P+L+ I G ++DVT+ + YGPGG Y FAG +S LAK F
Sbjct: 50 TKEELAVYNGTDESLPILLGILGSVFDVTKGKSNYGPGGGYHHFAG--SSWKLAKFQFLP 107
Query: 129 -------------ELDDLTGDVSGLGPIELEALHEWEGKFMSKYVKVGTI 165
D LT + GL +E+ ++ +W + +Y+ G I
Sbjct: 108 EIDVIGSASTSFPSSDGLTDSLQGLSSMEVNSIVDWRKFYFERYIFAGKI 157
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.305 0.128 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,235,439
Number of extensions: 518098
Number of successful extensions: 1408
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1402
Number of HSP's successfully gapped: 6
Length of query: 333
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 232
Effective length of database: 11,762,187
Effective search space: 2728827384
Effective search space used: 2728827384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 156 (64.7 bits)