BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0774100 Os02g0774100|Os02g0774100
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0774100  Thioredoxin domain 2 containing protein             266   6e-72
Os02g0819200  Thioredoxin domain 2 containing protein             123   8e-29

>Os02g0774100 Thioredoxin domain 2 containing protein
          Length = 187

 Score =  266 bits (680), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 137/187 (73%), Positives = 137/187 (73%)

Query: 1   MALIAPSPRVLRAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MALIAPSPRVLRARE                                             
Sbjct: 1   MALIAPSPRVLRAREAPAAGALQPPAAACSTVAGGGGAAGRPLGMWSGGGGGGGGKGRRR 60

Query: 61  XXXXXMLRAEAYFWDVSKPVEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYL 120
                MLRAEAYFWDVSKPVEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYL
Sbjct: 61  ERGDGMLRAEAYFWDVSKPVEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYL 120

Query: 121 KPRLEKIAGEFPGVRFYFVDVNKVPQTVVKRGNITLWKDGEWAAEVIGGHKAWLVMDEVR 180
           KPRLEKIAGEFPGVRFYFVDVNKVPQTVVKRGNITLWKDGEWAAEVIGGHKAWLVMDEVR
Sbjct: 121 KPRLEKIAGEFPGVRFYFVDVNKVPQTVVKRGNITLWKDGEWAAEVIGGHKAWLVMDEVR 180

Query: 181 EMIQKHK 187
           EMIQKHK
Sbjct: 181 EMIQKHK 187



>Os02g0819200 Thioredoxin domain 2 containing protein
          Length = 188

 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 81/115 (70%), Gaps = 7/115 (6%)

Query: 80  VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGE-FPGVRFYF 138
           VE+E I S ++L+ AL  + +   PI++ WMASWCRKCIYLKP+LE +A E +P +RFY 
Sbjct: 74  VELEPIGSEQQLERALAEAQQLGLPIVLLWMASWCRKCIYLKPKLENLAAECYPRIRFYC 133

Query: 139 VDVNKVPQTVVKRGNIT------LWKDGEWAAEVIGGHKAWLVMDEVREMIQKHK 187
           VDVN VPQ +V R  +T      LW D +  AEVIGGHK+WLV+D+VR MI + +
Sbjct: 134 VDVNAVPQKLVNRAGVTKMPSIQLWSDSQKQAEVIGGHKSWLVIDDVRRMIDQEE 188



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,093,237
Number of extensions: 181073
Number of successful extensions: 440
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)