Os02g0819200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
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Os02g0819200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin domain 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.86 | 0.261 | 9.58 | 0.493 | 0.236 | -1.28 | -0.45 | 0.134 | 0.309 | 20.4 | 20.36 | 1992 | -- | -- |
| 30.85 | 0.259 | 9.58 | 0.495 | 0.233 | -1.31 | -0.432 | -- | 0.31 | 20.3 | 20.21 | 2037 | -- | -- |
| 31.39 | 0.261 | 9.58 | 0.494 | 0.231 | -1.23 | -- | 0.125 | 0.303 | 20.2 | 20.2 | 2114 | -- | -- |
| 31.39 | 0.261 | 9.58 | 0.495 | 0.231 | -1.25 | -- | -- | 0.307 | 20.1 | 20.09 | 2161 | -- | -- |
| 34.3 | 0.273 | 9.57 | 0.479 | -- | -1.25 | -- | 0.0474 | 0.299 | -- | 20.26 | 2163 | -- | -- |
| 44.78 | 0.314 | 9.54 | 0.883 | 0.258 | -- | -0.412 | -- | 0.468 | 20.6 | -- | -- | -- | -- |
| 45.33 | 0.315 | 9.54 | 0.896 | 0.259 | -- | -- | -- | 0.468 | 20.7 | -- | -- | -- | -- |
| 34.3 | 0.273 | 9.57 | 0.482 | -- | -1.26 | -- | -- | 0.299 | -- | 20.22 | 2169 | -- | -- |
| 36.31 | 0.281 | 9.6 | -- | 0.276 | -1.35 | -- | -- | 0.238 | 19.7 | 20.37 | 2419 | -- | -- |
| 49.12 | 0.327 | 9.53 | 0.896 | -- | -- | -- | -- | 0.466 | -- | -- | -- | -- | -- |
| 66.5 | 0.381 | 9.56 | -- | 0.257 | -- | -- | -- | 0.368 | 20.9 | -- | -- | -- | -- |
| 38.89 | 0.29 | 9.59 | -- | -- | -1.51 | -- | -- | 0.208 | -- | 20.36 | 2266 | -- | -- |
| 70.28 | 0.391 | 9.56 | -- | -- | -- | -- | -- | 0.366 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.40 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 3 | 30.97 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 6 | 31.25 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 9 | 31.39 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 1 | 15 |
| 39 | 31.59 | temperature | 20.0 | 1440 | < th | dose dependent | sin | 4 | NA |
| 48 | 31.62 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 49 | 31.62 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 52 | 31.63 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 53 | 31.63 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 57 | 31.64 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 88 | 31.77 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 91 | 31.78 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 137 | 31.90 | temperature | 20.0 | 1440 | < th | dose dependent | no | NA | NA |
| 143 | 31.91 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 148 | 31.92 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 158 | 31.93 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 159 | 31.93 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 195 | 32.02 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 201 | 32.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 234 | 32.11 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 296 | 32.25 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 22 | 8 |
| 311 | 32.29 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 324 | 32.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 325 | 32.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 337 | 32.34 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 351 | 32.36 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 9 |
| 362 | 32.38 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 11 |
| 370 | 32.39 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 393 | 32.43 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 396 | 32.43 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 397 | 32.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 405 | 32.44 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 412 | 32.45 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 15 |
| 432 | 32.48 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 454 | 32.52 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 455 | 32.52 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 464 | 32.54 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 13 |
| 466 | 32.54 | wind | 5.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 514 | 32.60 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 515 | 32.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 519 | 32.61 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 523 | 32.61 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 560 | 32.64 | wind | 3.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 562 | 32.64 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 580 | 32.66 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 597 | 32.67 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 22 | 16 |
| 606 | 32.69 | temperature | 20.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 615 | 32.70 | wind | 3.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 620 | 32.70 | wind | 1.0 | 43200 | > th | dose dependent | sin | 10 | NA |
| 628 | 32.71 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 655 | 32.74 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 669 | 32.75 | temperature | 20.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 687 | 32.76 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 779 | 32.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 783 | 32.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 22 | 20 |
| 800 | 32.83 | wind | 9.0 | 43200 | < th | dose independent | rect. | 6 | 12 |
| 834 | 32.84 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 16 |
| 841 | 32.85 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 849 | 32.85 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 21 |
| 861 | 32.86 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 890 | 32.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 900 | 32.88 | wind | 9.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 902 | 32.88 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 904 | 32.88 | wind | 9.0 | 43200 | > th | dose independent | rect. | 6 | 12 |
| 907 | 32.88 | wind | 9.0 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 929 | 32.89 | wind | 9.0 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 930 | 32.89 | wind | 9.0 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 935 | 32.89 | wind | 3.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 950 | 32.89 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 998 | 32.91 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 10 |