BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0819200 Os02g0819200|AK102564
         (188 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04260.1  | chr5:1178901-1180022 REVERSE LENGTH=193            153   4e-38
AT5G06690.2  | chr5:2060852-2061956 REVERSE LENGTH=215             89   1e-18

>AT5G04260.1 | chr5:1178901-1180022 REVERSE LENGTH=193
          Length = 192

 Score =  153 bits (387), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 86/117 (73%)

Query: 71  PTWVELEPIGSXXXXXXXXXXXXXXGLPIVLLWMASWCRKCIYLKPKLENLAAECYPRIR 130
           P  VEL PI                G  +V++WMA+WCRKCIYLKPKLE LAAE YPR+R
Sbjct: 73  PVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLR 132

Query: 131 FYCVDVNAVPQKLVNRAGVTKMPSIQLWSDSQKQAEVIGGHKSWLVIDDVRRMIDQE 187
           FY VDVNAVP +LV+RAGVTKMP+IQLW D QKQAEVIGGHK+  V+++VR MI+ +
Sbjct: 133 FYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189



>AT5G06690.2 | chr5:2060852-2061956 REVERSE LENGTH=215
          Length = 214

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 50/80 (62%)

Query: 71  PTWVELEPIGSXXXXXXXXXXXXXXGLPIVLLWMASWCRKCIYLKPKLENLAAECYPRIR 130
           PT +E+EPI +                PI++ WMASWCRKCIYLKPKLE LAAE   R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 131 FYCVDVNAVPQKLVNRAGVT 150
           FY VDVN VPQ LV R  ++
Sbjct: 153 FYYVDVNKVPQTLVKRGNIS 172



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,647,379
Number of extensions: 128472
Number of successful extensions: 401
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 2
Length of query: 188
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 95
Effective length of database: 8,556,881
Effective search space: 812903695
Effective search space used: 812903695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)