Os02g0774100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
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Os02g0774100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin domain 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 226.94 | 0.708 | 9.7 | 0.267 | 1.11 | -10.6 | 2.36 | 1.02 | 0.0756 | 14.8 | 3.43 | 877 | 16.2 | 13.6 |
| 222.57 | 0.695 | 9.69 | 0.245 | 0.984 | -11 | 2.07 | -- | 0.0978 | 14.4 | 3.152 | 854 | 16.3 | 13.8 |
| 232.46 | 0.71 | 9.72 | 0.0295 | 0.823 | -11.2 | -- | -1.76 | -0.0273 | 12.9 | 1.675 | 855 | 16.3 | 13.7 |
| 232.13 | 0.71 | 9.7 | 0.17 | 0.663 | -11.4 | -- | -- | 0.0244 | 12.6 | 1.575 | 837 | 16.3 | 13.9 |
| 233.79 | 0.712 | 9.75 | 0.0421 | -- | -11.5 | -- | -1.01 | -0.0784 | -- | 2.178 | 830 | 16.2 | 13.5 |
| 710.81 | 1.25 | 10.1 | -1.07 | 8.17 | -- | 2.29 | -- | -0.913 | 17.4 | -- | -- | -- | -- |
| 723.8 | 1.26 | 10.1 | -1.08 | 8.19 | -- | -- | -- | -0.903 | 17.4 | -- | -- | -- | -- |
| 233.18 | 0.711 | 9.74 | 0.156 | -- | -11.6 | -- | -- | -0.0786 | -- | 1.153 | 838 | 16 | 13.7 |
| 231.88 | 0.709 | 9.71 | -- | 0.48 | -11.5 | -- | -- | -0.0396 | 12.3 | 1.727 | 826 | 16.2 | 13.9 |
| 4216.2 | 3.03 | 9.96 | -1.36 | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
| 754.53 | 1.28 | 10 | -- | 8.21 | -- | -- | -- | -0.782 | 17.4 | -- | -- | -- | -- |
| 225.73 | 0.7 | 9.74 | -- | -- | -11.8 | -- | -- | -0.0801 | -- | -0.5716 | 856 | 15.6 | 14.4 |
| 4264.68 | 3.05 | 9.93 | -- | -- | -- | -- | -- | -0.954 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 285.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 31 | 317.22 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 37 | 319.25 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 6 |
| 45 | 323.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 46 | 324.06 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 57 | 327.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 63 | 330.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 76 | 332.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 132 | 341.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 178 | 349.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 20 |
| 213 | 354.03 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 18 |
| 261 | 360.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 264 | 360.48 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 19 |
| 316 | 363.94 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 21 |
| 362 | 367.31 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 1 |
| 363 | 367.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 368 | 367.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 381 | 368.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 398 | 369.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 411 | 370.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 505 | 372.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 525 | 373.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 528 | 373.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 559 | 374.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 563 | 374.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 599 | 374.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 674 | 375.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 695 | 375.83 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 713 | 375.97 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 792 | 376.67 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 971 | 378.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 10 |