BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0774100 Os02g0774100|Os02g0774100
(187 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04260.1 | chr5:1178901-1180022 REVERSE LENGTH=193 113 5e-26
AT5G06690.2 | chr5:2060852-2061956 REVERSE LENGTH=215 112 9e-26
AT1G45145.1 | chr1:17075264-17076256 REVERSE LENGTH=119 50 6e-07
AT3G53220.1 | chr3:19722032-19722615 FORWARD LENGTH=127 49 1e-06
AT3G51030.1 | chr3:18951123-18951955 REVERSE LENGTH=115 49 2e-06
AT5G39950.1 | chr5:15990885-15991881 REVERSE LENGTH=134 46 9e-06
>AT5G04260.1 | chr5:1178901-1180022 REVERSE LENGTH=193
Length = 192
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 75/113 (66%), Gaps = 7/113 (6%)
Query: 80 VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGEF-PGVRFYF 138
VE+ I D + + + + ++I WMA+WCRKCIYLKP+LEK+A EF P +RFY
Sbjct: 76 VELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYH 135
Query: 139 VDVNKVPQTVVKRGNIT------LWKDGEWAAEVIGGHKAWLVMDEVREMIQK 185
VDVN VP +V R +T LW+DG+ AEVIGGHKA V++EVREMI+
Sbjct: 136 VDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEN 188
>AT5G06690.2 | chr5:2060852-2061956 REVERSE LENGTH=215
Length = 214
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 75/92 (81%), Gaps = 3/92 (3%)
Query: 68 RAEAYFWDVSKP--VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLE 125
R +A++ ++++P +EME I+++E+LD L + + QPIII+WMASWCRKCIYLKP+LE
Sbjct: 82 RLKAFWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLE 141
Query: 126 KIAGEFPG-VRFYFVDVNKVPQTVVKRGNITL 156
K+A E+ +FY+VDVNKVPQT+VKRGNI++
Sbjct: 142 KLAAEYNNRAKFYYVDVNKVPQTLVKRGNISV 173
>AT1G45145.1 | chr1:17075264-17076256 REVERSE LENGTH=119
Length = 118
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 87 SMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGEFPGVRFYFVDVNKVPQ 146
++E ++ ++ + E+K+ I+ID+ ASWC C ++ P ++A +F V F+ +DV+++ Q
Sbjct: 12 TLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDEL-Q 70
Query: 147 TVVKRGNI------TLWKDGEWAAEVIGGHKAWLVMDEVREMIQKH 186
V + + K+G V+G K DE+ E + KH
Sbjct: 71 AVAQEFKVEAMPTFVFMKEGNIIDRVVGAAK-----DEINEKLMKH 111
>AT3G53220.1 | chr3:19722032-19722615 FORWARD LENGTH=127
Length = 126
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 101 NKQPIIIDWMASWCRKCIYLKPRLEKIAGEFPGVRFYFVDVNKVPQT---VVKRGNITLW 157
+K P +I++ ASWC C + P K++ F ++F + D+++ P+T + +
Sbjct: 42 SKSPAVINYGASWCGVCSQILPAFRKLSNSFSKLKFVYADIDECPETTRHIRYTPTFQFY 101
Query: 158 KDGEWAAEVIGGHKAWL 174
+DGE E+ G + L
Sbjct: 102 RDGEKVDEMFGAGEQRL 118
>AT3G51030.1 | chr3:18951123-18951955 REVERSE LENGTH=115
Length = 114
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 87 SMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGEFPGVRFYFVDVNKVPQ 146
++E ++ L+ + E+K +++D+ ASWC C ++ P +A + P V F VD +++
Sbjct: 13 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKS 72
Query: 147 -----TVVKRGNITLWKDGEWAAEVIGGHKAWLVMDEVREMIQKH 186
+ K+G+ +V+G K DE++ I KH
Sbjct: 73 VASDWAIQAMPTFMFLKEGKILDKVVGAKK-----DELQSTIAKH 112
>AT5G39950.1 | chr5:15990885-15991881 REVERSE LENGTH=134
Length = 133
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 18/108 (16%)
Query: 90 KLDDALRWSV------ENKQPIIIDWMASWCRKCIYLKPRLEKIAGEFPGVRFYFVDVNK 143
K + RW + E+ + +++D+ ASWC C ++P + +A +F V F +DV++
Sbjct: 29 KFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDE 88
Query: 144 VPQTVVKRGNIT------LWKDGEWAAEVIGGHKAWLVMDEVREMIQK 185
+P V K N+T L K G+ +IG K DE+ + + K
Sbjct: 89 LPD-VAKEFNVTAMPTFVLVKRGKEIERIIGAKK-----DELEKKVSK 130
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,196,053
Number of extensions: 118715
Number of successful extensions: 347
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 6
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)