BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0772000 Os02g0772000|Os02g0772000
(954 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0772000 NGN domain containing protein 1706 0.0
Os06g0208300 Translation protein SH3-like domain containing... 374 e-103
AK067434 184 2e-46
>Os02g0772000 NGN domain containing protein
Length = 954
Score = 1706 bits (4418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/869 (96%), Positives = 835/869 (96%)
Query: 86 SILIDDMAQVXXXXXXXXXXXXXXXXXXXTRADDPDQDVGRSSRRHPSSMLDEEEDVDAL 145
SILIDDMAQV TRADDPDQDVGRSSRRHPSSMLDEEEDVDAL
Sbjct: 86 SILIDDMAQVDDEEEEEEDGEFEDGFIDDTRADDPDQDVGRSSRRHPSSMLDEEEDVDAL 145
Query: 146 VKLIHDRYIIPSSHFVDDDDGVTEVEQQALLPSVKDPKLWMVKCAIGHERETAICLMQKS 205
VKLIHDRYIIPSSHFVDDDDGVTEVEQQALLPSVKDPKLWMVKCAIGHERETAICLMQKS
Sbjct: 146 VKLIHDRYIIPSSHFVDDDDGVTEVEQQALLPSVKDPKLWMVKCAIGHERETAICLMQKS 205
Query: 206 IDTPDLQIKSVLALDHLKNYIYVEAYKEAHVKEACKGVRNIFASRKVTLVPIREVADVLS 265
IDTPDLQIKSVLALDHLKNYIYVEAYKEAHVKEACKGVRNIFASRKVTLVPIREVADVLS
Sbjct: 206 IDTPDLQIKSVLALDHLKNYIYVEAYKEAHVKEACKGVRNIFASRKVTLVPIREVADVLS 265
Query: 266 VQSKSTDISINTWVRMKLGAYKGDLAXXXXXXXXXXXXXXXLIPRIDLQALANKFDGLKV 325
VQSKSTDISINTWVRMKLGAYKGDLA LIPRIDLQALANKFDGLKV
Sbjct: 266 VQSKSTDISINTWVRMKLGAYKGDLAKVVDVDDVHQKVTVKLIPRIDLQALANKFDGLKV 325
Query: 326 VKEKKSFVPPPKLFSANEARRNRDSGEYYEMVDGLKFKDGFLHKTFSIKSISAHNIQPSF 385
VKEKKSFVPPPKLFSANEARRNRDSGEYYEMVDGLKFKDGFLHKTFSIKSISAHNIQPSF
Sbjct: 326 VKEKKSFVPPPKLFSANEARRNRDSGEYYEMVDGLKFKDGFLHKTFSIKSISAHNIQPSF 385
Query: 386 DELEKFREPDNDINEDAASLSTLFTNRKKGHFMKGDSVIVIKGDLKNLEGYVEKAEDATV 445
DELEKFREPDNDINEDAASLSTLFTNRKKGHFMKGDSVIVIKGDLKNLEGYVEKAEDATV
Sbjct: 386 DELEKFREPDNDINEDAASLSTLFTNRKKGHFMKGDSVIVIKGDLKNLEGYVEKAEDATV 445
Query: 446 HIRSKLPGLLNTLVFNEGDLCKCFNPGDHVKVVSGVQEGATGLVVKVEGHVLIILSDTTK 505
HIRSKLPGLLNTLVFNEGDLCKCFNPGDHVKVVSGVQEGATGLVVKVEGHVLIILSDTTK
Sbjct: 446 HIRSKLPGLLNTLVFNEGDLCKCFNPGDHVKVVSGVQEGATGLVVKVEGHVLIILSDTTK 505
Query: 506 EHIRVFADHVVESSEVTTGLTRIGDYELHDLVLLGESKGLWNIYTEEYFLFMIVTTLNIQ 565
EHIRVFADHVVESSEVTTGLTRIGDYELHDLVLLGESKGLWNIYTEEYFLFMIVTTLNIQ
Sbjct: 506 EHIRVFADHVVESSEVTTGLTRIGDYELHDLVLLGESKGLWNIYTEEYFLFMIVTTLNIQ 565
Query: 566 ALSVQAHNHASLLGDQLGMGTVDPRFGAFRSSARILQSPGRLPPKAPHTNYGRRFGGRDH 625
ALSVQAHNHASLLGDQLGMGTVDPRFGAFRSSARILQSPGRLPPKAPHTNYGRRFGGRDH
Sbjct: 566 ALSVQAHNHASLLGDQLGMGTVDPRFGAFRSSARILQSPGRLPPKAPHTNYGRRFGGRDH 625
Query: 626 GGKGHDTLVNRCIKIKSGPYKGYRGRVKEMTGALVRVELDSLMKVVAVKREDIADTATVA 685
GGKGHDTLVNRCIKIKSGPYKGYRGRVKEMTGALVRVELDSLMKVVAVKREDIADTATVA
Sbjct: 626 GGKGHDTLVNRCIKIKSGPYKGYRGRVKEMTGALVRVELDSLMKVVAVKREDIADTATVA 685
Query: 686 TPFGESHNSWGNETPVHPSRTPLRPFQTPLRDPGATPVPNGMRTPMPSRAWAPMSPPRNG 745
TPFGESHNSWGNETPVHPSRTPLRPFQTPLRDPGATPVPNGMRTPMPSRAWAPMSPPRNG
Sbjct: 686 TPFGESHNSWGNETPVHPSRTPLRPFQTPLRDPGATPVPNGMRTPMPSRAWAPMSPPRNG 745
Query: 746 WEDAVTWESSPTYQPGTPVPQPHEAPTPGSGWAVTPGVSFGDASGKNPSSYATPTPSGQP 805
WEDAVTWESSPTYQPGTPVPQPHEAPTPGSGWAVTPGVSFGDASGKNPSSYATPTPSGQP
Sbjct: 746 WEDAVTWESSPTYQPGTPVPQPHEAPTPGSGWAVTPGVSFGDASGKNPSSYATPTPSGQP 805
Query: 806 MTPNPASYLPSTPGGQPMTLGYIEMDIMSPAIGEEGGRNWLLPDVLVNVLREGYDTTCGV 865
MTPNPASYLPSTPGGQPMTLGYIEMDIMSPAIGEEGGRNWLLPDVLVNVLREGYDTTCGV
Sbjct: 806 MTPNPASYLPSTPGGQPMTLGYIEMDIMSPAIGEEGGRNWLLPDVLVNVLREGYDTTCGV 865
Query: 866 VKEVLPDGSCRVALGSSGSGDEITAFPNEFEVVKPKKNDKLKIMSGSWRGLTGKLLGVDG 925
VKEVLPDGSCRVALGSSGSGDEITAFPNEFEVVKPKKNDKLKIMSGSWRGLTGKLLGVDG
Sbjct: 866 VKEVLPDGSCRVALGSSGSGDEITAFPNEFEVVKPKKNDKLKIMSGSWRGLTGKLLGVDG 925
Query: 926 SDGIVKVDGLETTDQTKILDTAILGKLAA 954
SDGIVKVDGLETTDQTKILDTAILGKLAA
Sbjct: 926 SDGIVKVDGLETTDQTKILDTAILGKLAA 954
>Os06g0208300 Translation protein SH3-like domain containing protein
Length = 291
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/296 (66%), Positives = 226/296 (76%), Gaps = 14/296 (4%)
Query: 668 MKVVAVKREDIADTATVATPFGESHNSWGNETPVHPSRTPLRPFQTPLRDPGATPVPNGM 727
MK+V VKR+DIADT TVATPF E G ETP+HPSRTPL P+QTP+RDPGATP+ +GM
Sbjct: 1 MKIVTVKRDDIADTPTVATPFREPRYPLGGETPMHPSRTPLHPYQTPMRDPGATPIHDGM 60
Query: 728 RTPMPSRAWAPMSPPRNGWEDA--VTWESSPTYQPGTPVPQPHEAPTPGSGWAVTPGVSF 785
RTPM R WAPMSPPR+ WE+ TW SSP YQPGTP +P+EAPTPGSGWA TPGVS+
Sbjct: 61 RTPM-RRGWAPMSPPRDNWEEGNPATWGSSPAYQPGTPPARPYEAPTPGSGWANTPGVSY 119
Query: 786 GDAS-------GKNPSSYATPTPSGQPMTPNPASYLPSTPGGQPMTLGYIEMDIMSPAIG 838
DA G PS Y TP GQPMTPN ASYLP TPGGQPMT G + MDIMSP IG
Sbjct: 120 NDAPTPRESNYGNAPSPYVPSTPVGQPMTPNSASYLPGTPGGQPMTPGNVGMDIMSPIIG 179
Query: 839 EEGGRNWLLPDVLVNVLREGYDTTCGVVKEVLPDGSCRVALGSSGSGDEITAFPNEFEVV 898
EG NWLLPDVLVNVLR G D GVV+EVL DGSCRVALGSSG+G+ +T P E EV+
Sbjct: 180 GEGEGNWLLPDVLVNVLRAG-DDGPGVVREVLADGSCRVALGSSGNGEIVTVLPTELEVI 238
Query: 899 KPKKNDKLKIMSGSWRGLTGKLLGVDGSDGIVKVDGLETTDQTKILDTAILGKLAA 954
+PKK+DK+KIM+G++RG +GKL+G+DGSDGIVK+D T + KILD IL KLA+
Sbjct: 239 RPKKSDKIKIMNGNFRGYSGKLIGIDGSDGIVKLD---DTYEVKILDMVILAKLAS 291
>AK067434
Length = 1094
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 156/287 (54%), Gaps = 28/287 (9%)
Query: 126 RSSRRHPSSML----DEEEDVDALVKLIHDRYIIPSSH--FVDDDDGVTEVEQQALLPS- 178
R+ R HP L +EE D L + I DRY H F DG T V+
Sbjct: 101 RTERSHPLPFLGIVKEEELSGDELEEFIKDRYSSRVKHTPF----DGSTNVQDDEFTEDG 156
Query: 179 -VKDPKLWMVKCAIGHERETAICLMQKSIDTPDLQIK----SVLALDHLKNYIYVEAYKE 233
+K+P +W +KC +G ER+ A CLMQK +D K S ALDH++ +++VEA K
Sbjct: 157 LLKEPVIWRIKCMVGRERQIAFCLMQKYVDLQKFGTKVPIISAFALDHVRGFVFVEAEKA 216
Query: 234 AHVKEACKGVRNIFASRKVTLVPIREVADVLSVQSKSTDISINTWVRMKLGAYKGDLAXX 293
V EACKG +++ SR + VP+ EV +LS ++K IS TWVRMK G YKGDLA
Sbjct: 217 CDVTEACKGFCSVYISR-INSVPVAEVPSLLSSRAKPFAISPGTWVRMKTGIYKGDLAQV 275
Query: 294 XXXXXXXXXXXXXLIPRIDLQALANKFDGLKVVKEKKSFVPPPKLFSAN---------EA 344
LIPR+DL+A++ K G +KE + +P P+L S+ E
Sbjct: 276 VSADEGRKRVMIKLIPRVDLRAISKKIGGAIPLKE--AAIPAPRLISSQELEFFGSHIER 333
Query: 345 RRNRDSGEYYEMVDGLKFKDGFLHKTFSIKSISAHNIQPSFDELEKF 391
+ +R + ++YE++DGL FKDGFL+K ++ S+ IQP+ EL KF
Sbjct: 334 KHDRQTNDFYEVLDGLMFKDGFLYKRVALSSLIYWGIQPTETELLKF 380
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,280,696
Number of extensions: 1635380
Number of successful extensions: 7339
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 7314
Number of HSP's successfully gapped: 3
Length of query: 954
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 844
Effective length of database: 11,292,261
Effective search space: 9530668284
Effective search space used: 9530668284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)