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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0772000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NGN domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0316) R2 : 0.303
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.83 (0.0787) R2dC : 0.171 R2C : 0.128
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.624 (0.0665) R2dN8 : 0.174 R2N8 : 0.131
σ : 0.596
deviance : 162.26
__
_____
C
peak time of C : 21
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.87 0.573 3.49 -0.513 0.508 0.776 -0.224 -1.46 0.599 21.8 82.04 713 -- --
151.1 0.573 3.47 -0.466 0.511 0.703 -0.563 -- 0.606 21.8 83 726 -- --
148.99 0.569 3.49 -0.516 0.508 0.753 -- -1.51 0.596 21.5 83 746 -- --
152.5 0.575 3.48 -0.419 0.549 0.633 -- -- 0.608 21.6 83.07 727 -- --
157.82 0.585 3.48 -0.53 -- 1.24 -- -1.79 0.555 -- 92.01 745 -- --
158.21 0.59 3.49 -0.365 0.826 -- -0.505 -- 0.585 21.1 -- -- -- --
159.09 0.591 3.49 -0.347 0.829 -- -- -- 0.586 21 -- -- -- --
162.38 0.594 3.47 -0.409 -- 1.18 -- -- 0.568 -- 93.19 745 -- --
156.74 0.583 3.47 -- 0.543 0.627 -- -- 0.619 21.5 93 713 -- --
198.64 0.659 3.47 -0.345 -- -- -- -- 0.581 -- -- -- -- --
162.26 0.596 3.48 -- 0.83 -- -- -- 0.624 21 -- -- -- --
166.64 0.601 3.46 -- -- 1.17 -- -- 0.61 -- 94.08 741 -- --
201.79 0.663 3.46 -- -- -- -- -- 0.619 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.55 humidity 60 90 < th dose independent rect. 17 21
2 147.01 humidity 70 1440 < th dose independent rect. 8 5
5 147.56 temperature 30 90 > th dose independent rect. 12 1
19 147.62 humidity 70 1440 > th dose independent rect. 8 5
20 147.69 temperature 30 30 > th dose independent rect. 12 3
23 147.80 humidity 70 90 < th dose dependent rect. 17 21
24 147.82 temperature 10 720 > th dose dependent rect. 13 8
26 147.87 humidity 70 1440 < th dose independent sin 5 NA
31 147.88 humidity 50 720 > th dose dependent rect. 5 18
34 147.93 wind 5 1440 < th dose dependent rect. 24 1
66 148.13 humidity 70 1440 > th dose independent rect. 23 14
69 148.14 humidity 70 1440 > th dose independent rect. 4 9
83 148.22 humidity 80 720 < th dose dependent rect. 13 23
85 148.23 humidity 50 720 > th dose dependent rect. 7 16
88 148.25 humidity 50 720 > th dose dependent rect. 11 12
89 148.26 humidity 70 1440 > th dose independent sin 6 NA
90 148.26 humidity 70 720 < th dose independent rect. 14 22
94 148.28 humidity 70 1440 < th dose independent rect. 18 21
99 148.31 humidity 50 720 > th dose dependent rect. 9 15
104 148.32 wind 1 1440 > th dose dependent rect. 24 1
135 148.45 wind 5 14400 > th dose independent rect. 22 16
152 148.51 wind 5 14400 < th dose independent rect. 22 16
169 148.55 wind 3 1440 < th dose dependent rect. 24 3
170 148.55 wind 3 1440 < th dose dependent rect. 24 6
175 148.57 humidity 80 1440 < th dose dependent rect. 20 17
199 148.61 humidity 80 720 < th dose dependent rect. 20 23
217 148.67 radiation 40 1440 > th dose independent rect. 10 4
222 148.68 temperature 25 720 < th dose independent rect. 12 21
225 148.68 humidity 80 1440 < th dose dependent rect. 8 5
241 148.73 humidity 70 720 > th dose independent rect. 1 23
242 148.74 humidity 70 720 > th dose independent rect. 5 18
247 148.75 humidity 70 720 > th dose independent rect. 2 21
252 148.76 humidity 70 720 < th dose independent rect. 8 11
257 148.77 temperature 25 720 < th dose independent rect. 14 1
262 148.77 humidity 90 720 < th dose dependent rect. 8 15
267 148.78 humidity 80 720 < th dose dependent rect. 16 23
269 148.79 humidity 80 1440 < th dose dependent sin 5 NA
275 148.80 humidity 80 1440 < th dose dependent rect. 2 12
282 148.82 wind 3 1440 < th dose independent rect. 24 1
286 148.82 humidity 50 720 > th dose dependent sin 22 NA
287 148.82 humidity 80 1440 < th dose dependent rect. 5 9
294 148.82 humidity 80 720 < th dose dependent rect. 2 17
307 148.83 temperature 25 720 < th dose independent rect. 2 21
321 148.84 humidity 80 720 < th dose dependent rect. 7 12
326 148.85 wind 3 1440 > th dose independent rect. 24 1
389 148.90 temperature 25 720 > th dose independent rect. 12 21
415 148.92 humidity 80 720 < th dose dependent rect. 7 21
417 148.92 humidity 80 720 < th dose dependent rect. 24 22
423 148.93 temperature 25 720 < th dose independent rect. 11 12
427 148.93 humidity 80 720 < th dose dependent no NA NA
438 148.93 humidity 80 720 < th dose dependent rect. 2 20
457 148.94 humidity 50 720 > th dose dependent rect. 12 1
519 148.96 temperature 10 720 > th dose dependent rect. 13 12
537 148.97 atmosphere 1000 10 < th dose independent rect. 13 1
541 148.97 radiation 40 1440 > th dose independent rect. 12 23
548 148.98 radiation 40 1440 > th dose independent sin 0 NA
633 149.02 radiation 40 1440 > th dose independent no NA NA
830 149.07 humidity 70 720 < th dose independent no NA NA
908 149.09 wind 1 1440 > th dose dependent rect. 23 6
909 149.09 humidity 50 720 > th dose dependent rect. 11 6
912 149.10 temperature 25 720 > th dose independent rect. 2 20
913 149.10 humidity 90 720 < th dose dependent sin 20 NA
919 149.11 humidity 80 720 < th dose dependent sin 0 NA
922 149.11 radiation 10 720 < th dose dependent rect. 14 10
979 149.16 wind 5 14400 > th dose independent sin 6 NA