BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0765900 Os02g0765900|J033125O14
(424 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0765900 Ferredoxin-nitrite reductase family protein 875 0.0
Os01g0357100 Ferredoxin-nitrite reductase (EC 1.7.7.1) 473 e-133
D50556 472 e-133
>Os02g0765900 Ferredoxin-nitrite reductase family protein
Length = 424
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/424 (100%), Positives = 424/424 (100%)
Query: 1 MKWNILTLTAKILFRHLAQLEPWARGPLIRLFAKHILVFWGPRVNLAQNANGRSTALRCA 60
MKWNILTLTAKILFRHLAQLEPWARGPLIRLFAKHILVFWGPRVNLAQNANGRSTALRCA
Sbjct: 1 MKWNILTLTAKILFRHLAQLEPWARGPLIRLFAKHILVFWGPRVNLAQNANGRSTALRCA 60
Query: 61 DGRFMMRLKLPNGVTTSEQTRYLASVIEAYGKDGCADVTTRQNWQIRGVTLPDVPAILDG 120
DGRFMMRLKLPNGVTTSEQTRYLASVIEAYGKDGCADVTTRQNWQIRGVTLPDVPAILDG
Sbjct: 61 DGRFMMRLKLPNGVTTSEQTRYLASVIEAYGKDGCADVTTRQNWQIRGVTLPDVPAILDG 120
Query: 121 LNAVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRSYTNLLSYITSNFQGNPTITNLSG 180
LNAVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRSYTNLLSYITSNFQGNPTITNLSG
Sbjct: 121 LNAVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRSYTNLLSYITSNFQGNPTITNLSG 180
Query: 181 MEVFWSEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEGLSYVGLHVPVGRVQA 240
MEVFWSEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEGLSYVGLHVPVGRVQA
Sbjct: 181 MEVFWSEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEGLSYVGLHVPVGRVQA 240
Query: 241 ADMFELARLADEYGSGELRLTVEQNIVIPNVKDEKVEALLAEPLLQKFSPQPSLLLKGLV 300
ADMFELARLADEYGSGELRLTVEQNIVIPNVKDEKVEALLAEPLLQKFSPQPSLLLKGLV
Sbjct: 241 ADMFELARLADEYGSGELRLTVEQNIVIPNVKDEKVEALLAEPLLQKFSPQPSLLLKGLV 300
Query: 301 ACTGNQFCGQAIIETKQRALLVTSQVEKLVSVPRAVRMHWTGCPNSCGQVQVADIGFMGC 360
ACTGNQFCGQAIIETKQRALLVTSQVEKLVSVPRAVRMHWTGCPNSCGQVQVADIGFMGC
Sbjct: 301 ACTGNQFCGQAIIETKQRALLVTSQVEKLVSVPRAVRMHWTGCPNSCGQVQVADIGFMGC 360
Query: 361 LTKDSAGKIVEAADIFVGGRVGSDSHLAGVYKKSVPCDELAPIVADILVERFGAVRRERE 420
LTKDSAGKIVEAADIFVGGRVGSDSHLAGVYKKSVPCDELAPIVADILVERFGAVRRERE
Sbjct: 361 LTKDSAGKIVEAADIFVGGRVGSDSHLAGVYKKSVPCDELAPIVADILVERFGAVRRERE 420
Query: 421 ENEE 424
ENEE
Sbjct: 421 ENEE 424
>Os01g0357100 Ferredoxin-nitrite reductase (EC 1.7.7.1)
Length = 594
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/236 (97%), Positives = 233/236 (98%)
Query: 180 GMEVFWSEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEGLSYVGLHVPVGRVQ 239
GME F SEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEG+SYVGLHVPVGRVQ
Sbjct: 350 GMEAFRSEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEGMSYVGLHVPVGRVQ 409
Query: 240 AADMFELARLADEYGSGELRLTVEQNIVIPNVKDEKVEALLAEPLLQKFSPQPSLLLKGL 299
AADMFELARLADEYGSGELRLTVEQNIVIPNVK+EKVEALL+EPLLQKFSPQPSLLLKGL
Sbjct: 410 AADMFELARLADEYGSGELRLTVEQNIVIPNVKNEKVEALLSEPLLQKFSPQPSLLLKGL 469
Query: 300 VACTGNQFCGQAIIETKQRALLVTSQVEKLVSVPRAVRMHWTGCPNSCGQVQVADIGFMG 359
VACTGNQFCGQAIIETKQRALLVTSQVEKLVSVPRAVRMHWTGCPNSCGQVQVADIGFMG
Sbjct: 470 VACTGNQFCGQAIIETKQRALLVTSQVEKLVSVPRAVRMHWTGCPNSCGQVQVADIGFMG 529
Query: 360 CLTKDSAGKIVEAADIFVGGRVGSDSHLAGVYKKSVPCDELAPIVADILVERFGAV 415
CLTKDSAGKIVEAADIFVGGRVGSDSHLAG YKKSVPCDELAPIVADILVERFGAV
Sbjct: 530 CLTKDSAGKIVEAADIFVGGRVGSDSHLAGAYKKSVPCDELAPIVADILVERFGAV 585
Score = 224 bits (571), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 113/118 (95%), Positives = 115/118 (97%), Gaps = 3/118 (2%)
Query: 62 GRFMMRLKLPNGVTTSEQTRYLASVIEAYGKDGCADVTTRQNWQIRGVTLPDVPAILDGL 121
GRFMMRLKLPNGVTTSEQTRYLASVIEAYGK+GCADVTTR+ QIRGVTLPDVPAILDGL
Sbjct: 138 GRFMMRLKLPNGVTTSEQTRYLASVIEAYGKEGCADVTTRR--QIRGVTLPDVPAILDGL 195
Query: 122 NAVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRSYTNLL-SYITSNFQGNPTITNL 178
NAVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRSYTNLL SYITSNFQGNPTITNL
Sbjct: 196 NAVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRSYTNLLSSYITSNFQGNPTITNL 253
>D50556
Length = 596
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/236 (97%), Positives = 233/236 (98%)
Query: 180 GMEVFWSEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEGLSYVGLHVPVGRVQ 239
GME F SEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEG+SYVGLHVPVGRVQ
Sbjct: 352 GMEAFRSEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEGMSYVGLHVPVGRVQ 411
Query: 240 AADMFELARLADEYGSGELRLTVEQNIVIPNVKDEKVEALLAEPLLQKFSPQPSLLLKGL 299
AADMFELARLADEYGSGELRLTVEQNIVIPNVK+EKVEALL+EPLLQKFSPQPSLLLKGL
Sbjct: 412 AADMFELARLADEYGSGELRLTVEQNIVIPNVKNEKVEALLSEPLLQKFSPQPSLLLKGL 471
Query: 300 VACTGNQFCGQAIIETKQRALLVTSQVEKLVSVPRAVRMHWTGCPNSCGQVQVADIGFMG 359
VACTGNQFCGQAIIETKQRALLVTSQVEKLVSVPRAVRMHWTGCPNSCGQVQVADIGFMG
Sbjct: 472 VACTGNQFCGQAIIETKQRALLVTSQVEKLVSVPRAVRMHWTGCPNSCGQVQVADIGFMG 531
Query: 360 CLTKDSAGKIVEAADIFVGGRVGSDSHLAGVYKKSVPCDELAPIVADILVERFGAV 415
CLTKDSAGKIVEAADIFVGGRVGSDSHLAG YKKSVPCDELAPIVADILVERFGAV
Sbjct: 532 CLTKDSAGKIVEAADIFVGGRVGSDSHLAGAYKKSVPCDELAPIVADILVERFGAV 587
Score = 238 bits (606), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 116/118 (98%), Positives = 117/118 (99%), Gaps = 1/118 (0%)
Query: 62 GRFMMRLKLPNGVTTSEQTRYLASVIEAYGKDGCADVTTRQNWQIRGVTLPDVPAILDGL 121
GRFMMRLKLPNGVTTSEQTRYLASVIEAYGK+GCADVTTRQNWQIRGVTLPDVPAILDGL
Sbjct: 138 GRFMMRLKLPNGVTTSEQTRYLASVIEAYGKEGCADVTTRQNWQIRGVTLPDVPAILDGL 197
Query: 122 NAVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRSYTNLL-SYITSNFQGNPTITNL 178
NAVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRSYTNLL SYITSNFQGNPTITNL
Sbjct: 198 NAVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRSYTNLLSSYITSNFQGNPTITNL 255
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,346,861
Number of extensions: 608523
Number of successful extensions: 1472
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1473
Number of HSP's successfully gapped: 5
Length of query: 424
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 320
Effective length of database: 11,605,545
Effective search space: 3713774400
Effective search space used: 3713774400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)