Os01g0357100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ferredoxin-nitrite reductase (EC 1.7.7.1).
FiT-DB / Search/ Help/ Sample detail
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Os01g0357100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ferredoxin-nitrite reductase (EC 1.7.7.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.53 | 0.575 | 12.8 | 0.16 | 2.35 | 1.55 | 1.54 | -1.13 | -0.68 | 16.4 | 25 | 98 | 23.5 | -- |
| 151.06 | 0.572 | 12.8 | 0.301 | 2.36 | 1.55 | 1.41 | -- | -0.657 | 16.4 | 25.08 | 98 | 23.8 | -- |
| 155.6 | 0.581 | 12.8 | 0.221 | 2.4 | 1.56 | -- | -0.768 | -0.675 | 16.3 | 25 | 98 | 23.8 | -- |
| 156.28 | 0.582 | 12.8 | 0.316 | 2.39 | 1.54 | -- | -- | -0.638 | 16.3 | 25.02 | 98 | 23.9 | -- |
| 354.75 | 0.877 | 12.8 | 0.432 | -- | 1.87 | -- | 0.824 | -0.881 | -- | 25.3 | 437 | 22.5 | -- |
| 208.26 | 0.677 | 12.7 | 0.478 | 2.44 | -- | 1.42 | -- | -0.233 | 15.3 | -- | -- | -- | -- |
| 214.61 | 0.686 | 12.7 | 0.506 | 2.44 | -- | -- | -- | -0.225 | 15.2 | -- | -- | -- | -- |
| 219.81 | 0.691 | 12.7 | 0.441 | -- | 2.36 | -- | -- | -0.506 | -- | 14.6 | 1000 | 23 | -- |
| 158.92 | 0.587 | 12.8 | -- | 2.37 | 1.56 | -- | -- | -0.668 | 16.3 | 25.07 | 98 | 23.8 | -- |
| 552.26 | 1.1 | 12.7 | 0.402 | -- | -- | -- | -- | -0.289 | -- | -- | -- | -- | -- |
| 221.35 | 0.696 | 12.7 | -- | 2.43 | -- | -- | -- | -0.281 | 15.2 | -- | -- | -- | -- |
| 219.23 | 0.69 | 12.7 | -- | -- | 2.44 | -- | -- | -0.285 | -- | 14.7 | 1002 | 23.1 | -- |
| 556.52 | 1.1 | 12.7 | -- | -- | -- | -- | -- | -0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.59 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 8 |
| 2 | 147.63 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 10 |
| 3 | 150.02 | temperature | 25.0 | 90 | > th | dose independent | rect. | 23 | 13 |
| 4 | 150.66 | temperature | 25.0 | 90 | > th | dose independent | sin | 5 | NA |
| 8 | 151.64 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 15 | 153.37 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 14 |
| 19 | 154.19 | temperature | 25.0 | 90 | < th | dose independent | sin | 6 | NA |
| 21 | 154.40 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 22 | 154.58 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 27 | 154.75 | temperature | 25.0 | 30 | < th | dose independent | rect. | 3 | 15 |
| 50 | 156.57 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 51 | 156.58 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 52 | 156.67 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 53 | 156.67 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 55 | 156.74 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 75 | 158.16 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 20 |
| 85 | 158.62 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 1 | 21 |
| 86 | 158.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 89 | 158.82 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 10 |
| 93 | 158.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 94 | 158.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 105 | 159.46 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 107 | 159.51 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 16 |
| 108 | 159.52 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 14 |
| 115 | 159.62 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 18 |
| 134 | 159.98 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 8 |
| 142 | 160.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 18 |
| 143 | 160.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 151 | 160.45 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 162 | 160.78 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 163 | 160.79 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 168 | 160.85 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 16 |
| 169 | 160.91 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 170 | 160.92 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 185 | 161.16 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 186 | 161.16 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 191 | 161.27 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 1 | 11 |
| 224 | 161.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 22 |
| 225 | 161.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 237 | 161.77 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 242 | 161.80 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 245 | 161.83 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 254 | 161.94 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 6 | 7 |
| 263 | 162.05 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 271 | 162.22 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 284 | 162.40 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 291 | 162.46 | radiation | 1.0 | 270 | > th | dose independent | sin | 5 | NA |
| 311 | 162.68 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 314 | 162.71 | humidity | 90.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 325 | 162.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 10 |
| 327 | 162.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 334 | 162.91 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 14 |
| 339 | 162.95 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 12 |
| 342 | 162.97 | humidity | 90.0 | 90 | < th | dose independent | sin | 4 | NA |
| 343 | 162.97 | radiation | 1.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 349 | 163.04 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 351 | 163.07 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 9 |
| 379 | 163.45 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 384 | 163.47 | radiation | 1.0 | 270 | < th | dose independent | sin | 5 | NA |
| 393 | 163.54 | humidity | 90.0 | 90 | > th | dose independent | sin | 4 | NA |
| 399 | 163.60 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 418 | 163.79 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 440 | 163.99 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 9 |
| 447 | 164.04 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 450 | 164.06 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 470 | 164.20 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 505 | 164.48 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 9 |
| 509 | 164.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 512 | 164.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 516 | 164.51 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 518 | 164.51 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 521 | 164.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 524 | 164.52 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 526 | 164.52 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 529 | 164.53 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 577 | 164.85 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 583 | 164.89 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 587 | 164.90 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 588 | 164.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 591 | 164.91 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 595 | 164.91 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 598 | 164.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 600 | 164.93 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 604 | 164.97 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 613 | 165.03 | wind | 9.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 639 | 165.18 | temperature | 25.0 | 90 | > th | dose independent | rect. | 6 | 6 |
| 682 | 165.39 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 737 | 165.82 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 1 | 7 |
| 741 | 165.82 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 773 | 166.03 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 778 | 166.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 779 | 166.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 797 | 166.16 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 15 | 15 |
| 798 | 166.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 824 | 166.28 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 6 |
| 825 | 166.28 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 831 | 166.31 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 1 | 22 |
| 838 | 166.36 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 919 | 166.88 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 950 | 167.03 | wind | 7.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 970 | 167.11 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 974 | 167.12 | wind | 7.0 | 90 | < th | dose independent | rect. | 6 | 9 |
| 979 | 167.15 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 1 | 4 |