BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0762100 Os02g0762100|AK068833
         (168 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0762100  Similar to Regulator of ribonuclease-like prot...   311   2e-85
Os01g0722800  Dimethylmenaquinone methyltransferase family p...   272   1e-73
Os02g0761900  Dimethylmenaquinone methyltransferase family p...   268   2e-72

>Os02g0762100 Similar to Regulator of ribonuclease-like protein 2
          Length = 168

 Score =  311 bits (796), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/168 (92%), Positives = 156/168 (92%)

Query: 1   MAALPLATAEVCDANSNPIIAGELRALPPIFKIYGRRQVFAGPVATVKVFEDNVLVRELL 60
           MAALPLATAEVCDANSNPIIAGELRALPPIFKIYGRRQVFAGPVATVKVFEDNVLVRELL
Sbjct: 1   MAALPLATAEVCDANSNPIIAGELRALPPIFKIYGRRQVFAGPVATVKVFEDNVLVRELL 60

Query: 61  QEKGHGRVLVVDGGGSVRCXXXXXXXXXXXXINGWVGIVVNGCIRDVDEINGCDVGVRAL 120
           QEKGHGRVLVVDGGGSVRC            INGWVGIVVNGCIRDVDEINGCDVGVRAL
Sbjct: 61  QEKGHGRVLVVDGGGSVRCALLGGNLAQLAQINGWVGIVVNGCIRDVDEINGCDVGVRAL 120

Query: 121 NSHPMKSGKKGAGEKRVPVTIEGTRICDGEWLYADADGILISRTELTV 168
           NSHPMKSGKKGAGEKRVPVTIEGTRICDGEWLYADADGILISRTELTV
Sbjct: 121 NSHPMKSGKKGAGEKRVPVTIEGTRICDGEWLYADADGILISRTELTV 168



>Os01g0722800 Dimethylmenaquinone methyltransferase family protein
          Length = 168

 Score =  272 bits (695), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/168 (78%), Positives = 144/168 (85%)

Query: 1   MAALPLATAEVCDANSNPIIAGELRALPPIFKIYGRRQVFAGPVATVKVFEDNVLVRELL 60
           MAALPLATAEVCDAN++ I+ GELRAL PIF+IYGRRQVFAGP+ T+KV+EDNVL+RE L
Sbjct: 1   MAALPLATAEVCDANADLIMNGELRALQPIFQIYGRRQVFAGPIVTLKVYEDNVLIREFL 60

Query: 61  QEKGHGRVLVVDGGGSVRCXXXXXXXXXXXXINGWVGIVVNGCIRDVDEINGCDVGVRAL 120
           +EKGHGRVLVVDGGGS+RC             NGW GIVVNGCIRDVDEINGCD+GVRAL
Sbjct: 61  EEKGHGRVLVVDGGGSLRCAILGGNPVQQAQNNGWAGIVVNGCIRDVDEINGCDIGVRAL 120

Query: 121 NSHPMKSGKKGAGEKRVPVTIEGTRICDGEWLYADADGILISRTELTV 168
           NSHPMK+ KKG GEK VPVTI GTRICDGEWLYAD DGILISRTELTV
Sbjct: 121 NSHPMKANKKGIGEKHVPVTIAGTRICDGEWLYADTDGILISRTELTV 168



>Os02g0761900 Dimethylmenaquinone methyltransferase family protein
          Length = 168

 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/168 (76%), Positives = 143/168 (85%)

Query: 1   MAALPLATAEVCDANSNPIIAGELRALPPIFKIYGRRQVFAGPVATVKVFEDNVLVRELL 60
           MAALPLATAE+CDAN++ I+ GELRAL P+F++YGRRQVFAGP+ T+KV+EDNVLVRE L
Sbjct: 1   MAALPLATAELCDANAHLIMNGELRALQPVFQVYGRRQVFAGPIVTLKVYEDNVLVREFL 60

Query: 61  QEKGHGRVLVVDGGGSVRCXXXXXXXXXXXXINGWVGIVVNGCIRDVDEINGCDVGVRAL 120
           +EKG GRVLVVDGGGS+RC             NGW GIVVNGCIRDVDEINGCD+GVRAL
Sbjct: 61  EEKGQGRVLVVDGGGSLRCAILGGNPVQQAQNNGWAGIVVNGCIRDVDEINGCDIGVRAL 120

Query: 121 NSHPMKSGKKGAGEKRVPVTIEGTRICDGEWLYADADGILISRTELTV 168
           NSHPMK+ KKG GEK VPVTI GTRICDGEWLYAD DGILISRTELTV
Sbjct: 121 NSHPMKANKKGIGEKHVPVTIAGTRICDGEWLYADTDGILISRTELTV 168



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,800,307
Number of extensions: 225644
Number of successful extensions: 410
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 3
Length of query: 168
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 75
Effective length of database: 12,179,899
Effective search space: 913492425
Effective search space used: 913492425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)