Os02g0761900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dimethylmenaquinone methyltransferase family protein.
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Os02g0761900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dimethylmenaquinone methyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.45 | 0.291 | 12 | -0.509 | 0.433 | 0.9 | 0.13 | -0.207 | -0.25 | 9.29 | 1.02 | 10138 | -- | -- |
| 38.43 | 0.289 | 12 | -0.462 | 0.43 | 0.943 | 0.12 | -- | -0.239 | 9.2 | 0.9903 | 10160 | -- | -- |
| 38.48 | 0.289 | 12 | -0.5 | 0.431 | 0.903 | -- | -0.185 | -0.251 | 9.18 | 1.02 | 10156 | -- | -- |
| 38.47 | 0.289 | 12 | -0.459 | 0.427 | 0.941 | -- | -- | -0.239 | 9.15 | 0.97 | 10161 | -- | -- |
| 48.04 | 0.323 | 12 | -0.48 | -- | 0.986 | -- | -0.181 | -0.251 | -- | 1.18 | 10266 | -- | -- |
| 54.19 | 0.345 | 11.9 | -0.209 | 0.449 | -- | 0.11 | -- | -0.0278 | 9.34 | -- | -- | -- | -- |
| 54.23 | 0.345 | 11.9 | -0.205 | 0.448 | -- | -- | -- | -0.0277 | 9.32 | -- | -- | -- | -- |
| 47.96 | 0.323 | 12 | -0.438 | -- | 1.02 | -- | -- | -0.241 | -- | 1.177 | 10262 | -- | -- |
| 42.67 | 0.304 | 12 | -- | 0.423 | 0.886 | -- | -- | -0.237 | 8.83 | 1.49 | 10243 | -- | -- |
| 65.96 | 0.38 | 11.9 | -0.207 | -- | -- | -- | -- | -0.0259 | -- | -- | -- | -- | -- |
| 55.34 | 0.348 | 11.9 | -- | 0.448 | -- | -- | -- | -0.00486 | 9.35 | -- | -- | -- | -- |
| 52.38 | 0.337 | 12 | -- | -- | 0.913 | -- | -- | -0.219 | -- | 1.639 | 10260 | -- | -- |
| 67.09 | 0.382 | 11.9 | -- | -- | -- | -- | -- | -0.00287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 3 | 37.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 7 | 38.13 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 8 | 38.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 14 | 38.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 18 | 38.33 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 27 | 38.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 29 | 38.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 30 | 38.43 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 31 | 38.43 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 34 | 38.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 44 | 38.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 46 | 38.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 47 | 38.53 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 3 |
| 50 | 38.54 | temperature | 15 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 56 | 38.56 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 68 | 38.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 70 | 38.60 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 74 | 38.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 78 | 38.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 83 | 38.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 114 | 38.69 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 9 |
| 118 | 38.70 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 157 | 38.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 208 | 38.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 221 | 38.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 223 | 38.83 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 226 | 38.83 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 246 | 38.85 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 252 | 38.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 255 | 38.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 291 | 38.90 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 299 | 38.91 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 309 | 38.91 | temperature | 10 | 4320 | > th | dose dependent | sin | 1 | NA |
| 312 | 38.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 11 |
| 319 | 38.92 | radiation | 1 | 14400 | < th | dose independent | sin | 13 | NA |
| 323 | 38.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 324 | 38.92 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 335 | 38.93 | radiation | 1 | 14400 | > th | dose independent | sin | 13 | NA |
| 339 | 38.93 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 341 | 38.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 367 | 38.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 401 | 38.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 413 | 38.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 624 | 39.02 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 849 | 39.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 863 | 39.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 18 |
| 912 | 39.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 951 | 39.10 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 8 |
| 997 | 39.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 1 |