BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0754900 Os02g0754900|AY224470
(311 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0754900 Disulfide isomerase 578 e-165
Os06g0220800 Thioredoxin domain 2 containing protein 331 4e-91
AY739307 206 2e-53
Os08g0412401 Thioredoxin domain 2 containing protein 136 2e-32
Os03g0806500 Thioredoxin domain 2 containing protein 112 3e-25
>Os02g0754900 Disulfide isomerase
Length = 311
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/311 (90%), Positives = 281/311 (90%)
Query: 1 MATRLLCWXXXXXXXXXXXXXXXXXXXXCPVPTAAEEILGPGGTCTTLDRRGDPVGVIEG 60
MATRLLCW CPVPTAAEEILGPGGTCTTLDRRGDPVGVIEG
Sbjct: 1 MATRLLCWTALLLPIIAATAAASPLPEACPVPTAAEEILGPGGTCTTLDRRGDPVGVIEG 60
Query: 61 DEVTLAKAITLLHMNKDDYIAVLFYASWCPFSQECKPNFEILASLFPSIRHFAFEEXXXX 120
DEVTLAKAITLLHMNKDDYIAVLFYASWCPFSQECKPNFEILASLFPSIRHFAFEE
Sbjct: 61 DEVTLAKAITLLHMNKDDYIAVLFYASWCPFSQECKPNFEILASLFPSIRHFAFEESSIR 120
Query: 121 XXXXXXYGIHGFPTLFLLNSTMRVRYHGPRTVKSLAAFYRDVSGFDVSMTSEAVLHSVDG 180
YGIHGFPTLFLLNSTMRVRYHGPRTVKSLAAFYRDVSGFDVSMTSEAVLHSVDG
Sbjct: 121 PSIISRYGIHGFPTLFLLNSTMRVRYHGPRTVKSLAAFYRDVSGFDVSMTSEAVLHSVDG 180
Query: 181 IELKKDAEQENCPFWWARSPEKILQQDTYLALATAFVILRLLYLLFPKIGSFAKRAWRRH 240
IELKKDAEQENCPFWWARSPEKILQQDTYLALATAFVILRLLYLLFPKIGSFAKRAWRRH
Sbjct: 181 IELKKDAEQENCPFWWARSPEKILQQDTYLALATAFVILRLLYLLFPKIGSFAKRAWRRH 240
Query: 241 TLFPNLVGVHEYFFTYLEQARHKFFRLYPSKRGNLQEGARNATAWASKSLASVSIGEPST 300
TLFPNLVGVHEYFFTYLEQARHKFFRLYPSKRGNLQEGARNATAWASKSLASVSIGEPST
Sbjct: 241 TLFPNLVGVHEYFFTYLEQARHKFFRLYPSKRGNLQEGARNATAWASKSLASVSIGEPST 300
Query: 301 IGRTNSTNELR 311
IGRTNSTNELR
Sbjct: 301 IGRTNSTNELR 311
>Os06g0220800 Thioredoxin domain 2 containing protein
Length = 282
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/272 (62%), Positives = 195/272 (71%), Gaps = 16/272 (5%)
Query: 29 CPVPTAAEEILGPGGTCTTLDRRGDPVGVIEGDEVTLAKAITLLHMNKDDYIAVLFYASW 88
C P+AAE I+G C + RR P+GV EGD+ LA+A+ LLH NK+D+ AVLFYASW
Sbjct: 26 CTRPSAAEAIVGSPEACRSPLRR--PLGVTEGDDAILARAVNLLHANKEDFAAVLFYASW 83
Query: 89 CPFSQECKPNFEILASLFPSIRHFAFEEXXXXXXXXXXYGIHGFPTLFLLNSTMRVRYHG 148
CPFSQEC+ FE LA +FP+IRH A EE YGIHG+PTLFL+NST+RVRYHG
Sbjct: 84 CPFSQECRLRFEKLACIFPTIRHLAIEESTVRLRTRYRYGIHGYPTLFLINSTVRVRYHG 143
Query: 149 PRTVKSLAAFYRDVSGFDVSMTSEAVLHSVDGIELKKDAEQENCPFWWARSPEKILQQDT 208
PRTVKSLAAFY DVSG + SM D IE K+D EQE C FW AR+PE ILQ DT
Sbjct: 144 PRTVKSLAAFYNDVSGINPSMDPAV---GDDNIEPKRDCEQEKCLFWSARTPENILQPDT 200
Query: 209 YLALATAFVILRLLYLLFPKIGSFAKRAWRRHTLFPNLVGVHEYFFTYLEQARHKFFRLY 268
YL LA +FVILRLLYL +PKI +F KR W R TL FT LEQ +HKF R+Y
Sbjct: 201 YLTLAASFVILRLLYLFYPKITAFVKRTWSRRTL-----------FTCLEQGKHKFNRVY 249
Query: 269 PSKRGNLQEGARNATAWASKSLASVSIGEPST 300
PSK+GNL +GAR+ATAWASKSLASVSIGEPST
Sbjct: 250 PSKQGNLHDGARHATAWASKSLASVSIGEPST 281
>AY739307
Length = 264
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 144/217 (66%), Gaps = 7/217 (3%)
Query: 29 CPVPTAAEEILGPGGTCTTLD---RRGDPVGVIEGDEVTLAKAITLLHMNKDDYIAVLFY 85
CP AA +L +C R VGV+EGD+ L KA+TL+ N++D++A+LFY
Sbjct: 34 CPRQPAAAAVLPRQSSCPAAGSPGHRAHHVGVVEGDDFVLQKAVTLVLQNREDFVAILFY 93
Query: 86 ASWCPFSQECKPNFEILASLFPSIRHFAFEEXXXXXXXXXXYGIHGFPTLFLLNSTMRVR 145
ASWCPFS+ + +F+ L+S FP+I HF+FEE YG+ FPTLFL+NSTMRVR
Sbjct: 94 ASWCPFSKIFRTDFQKLSSFFPTIAHFSFEESRIKPRMLSRYGVRAFPTLFLVNSTMRVR 153
Query: 146 YHGPRTVKSLAAFYRDVSGFD-VSMTS---EAVLHSVDGIELKKDAEQENCPFWWARSPE 201
YHG RT+ SLA FY+DV+G + VS+ + E + V+ IE K EQ + F +ARSP+
Sbjct: 154 YHGSRTMNSLAMFYKDVTGMNPVSLDAISLERMEEVVNIIENDKKTEQGDSLFMFARSPD 213
Query: 202 KILQQDTYLALATAFVILRLLYLLFPKIGSFAKRAWR 238
++L QDT LALA++FV++RLL L PK+ + K+AWR
Sbjct: 214 RLLHQDTCLALASSFVLMRLLCFLLPKLNACVKQAWR 250
>Os08g0412401 Thioredoxin domain 2 containing protein
Length = 140
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 80/106 (75%)
Query: 59 EGDEVTLAKAITLLHMNKDDYIAVLFYASWCPFSQECKPNFEILASLFPSIRHFAFEEXX 118
+GD+ L KA+TL+ N++D++A+LFYASWCPFS+ + +F+ L+S FP+I HF+FEE
Sbjct: 16 QGDDFVLQKAVTLVLQNREDFVAILFYASWCPFSKIFRTDFQKLSSFFPTIAHFSFEESR 75
Query: 119 XXXXXXXXYGIHGFPTLFLLNSTMRVRYHGPRTVKSLAAFYRDVSG 164
YG+ FPTLFL+NSTMRVRYHG RT+ SLA FY+DV+G
Sbjct: 76 IKPRMLSRYGVRAFPTLFLVNSTMRVRYHGSRTMNSLAMFYKDVTG 121
>Os03g0806500 Thioredoxin domain 2 containing protein
Length = 301
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 124/261 (47%), Gaps = 26/261 (9%)
Query: 40 GPGGTCTTLDR----RGDPVGVIEGDEVTLAKAITLLHMNKDDYIAVLFYASWCPFSQEC 95
GPG R R +P +E +AK + L H + +VLFYA+WCPFS +
Sbjct: 38 GPGFVDALASRCPCIRIEPSPPVEVRGEAIAKELNLRH--RGVTYSVLFYAAWCPFSSKF 95
Query: 96 KPNFEILASLFPSIRHFAFEEXXXXXXXXXXYGIHGFPTLFLLNSTMRVRYHGPRTVKSL 155
+P FE L+++FP I HF EE YG+ GFP + L+N T VRY GP+ + SL
Sbjct: 96 RPIFEALSTMFPQIYHFTVEESSAMPSLFSRYGVRGFPAILLVNETTMVRYWGPKDLSSL 155
Query: 156 AAFYRDVSGFDVSMTSEAVLHSVDGIELKKDAEQENCPFWWA-RSPEKILQQDTYLALAT 214
FY++ +GFD VD +D+ + P RS KI + + ++ LA
Sbjct: 156 VDFYKETTGFD-----PIAYFDVD----HQDSTGDFRPVTPGDRSLRKIAKDEPFVLLAV 206
Query: 215 AFVILRLLYLLFPKIGSFAKRAWRRHTLFPNLVGVHEYFFTYLEQARHKF--------FR 266
F+IL++ P + S K NL G+ LE+A + R
Sbjct: 207 LFIILKVAAHFVPIVVSHLKTFLVVRVQNLNL-GIRRGSSQLLERALNVLDVKRLCSKLR 265
Query: 267 LYPSKRGNLQEGARNATAWAS 287
L +K +L++GA NA AWAS
Sbjct: 266 L-SNKTRDLRKGASNARAWAS 285
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,479,349
Number of extensions: 364568
Number of successful extensions: 1063
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 5
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 156 (64.7 bits)