BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0753400 Os02g0753400|J065121H03
         (312 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0753400  Conserved hypothetical protein                      471   e-133
Os09g0370000  Conserved hypothetical protein                      145   3e-35

>Os02g0753400 Conserved hypothetical protein
          Length = 312

 Score =  471 bits (1212), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/312 (78%), Positives = 246/312 (78%)

Query: 1   MKGGRGSNGAATDLLVCFPSRAHLALMPPKAICSPSRPSASEPVKRRHSTSRSGPPPPSA 60
           MKGGRGSNGAATDLLVCFPSRAHLALMPPKAICSPSRPSASEPVKRRHSTSRSGPPPPSA
Sbjct: 1   MKGGRGSNGAATDLLVCFPSRAHLALMPPKAICSPSRPSASEPVKRRHSTSRSGPPPPSA 60

Query: 61  ALFKAAASGRNPSRRAADVPVDNEPSSPKVTCAGQIKARRPXXXXXXXXXXXXXXXXXXX 120
           ALFKAAASGRNPSRRAADVPVDNEPSSPKVTCAGQIKARRP                   
Sbjct: 61  ALFKAAASGRNPSRRAADVPVDNEPSSPKVTCAGQIKARRPAAKPKISGAGGGAGGAKAA 120

Query: 121 XXXTWLQALGIKKDALPFLNAVHGAFRLNVAGCFGSFPGAVVEYTSGXXXXXXXLAAGKD 180
              TWLQALGIKKDALPFLNAVHGAFRLNVAGCFGSFPGAVVEYTSG       LAAGKD
Sbjct: 121 KKATWLQALGIKKDALPFLNAVHGAFRLNVAGCFGSFPGAVVEYTSGEDDDDEELAAGKD 180

Query: 181 TEHGAALAKWFMVLEEGKKVSSRKRXXXXXXXXXXXXXXXXXADVAPPANALMLMRCRSA 240
           TEHGAALAKWFMVLEEGKKVSSRKR                 ADVAPPANALMLMRCRSA
Sbjct: 181 TEHGAALAKWFMVLEEGKKVSSRKREQEPQKQQEEEEQDKKEADVAPPANALMLMRCRSA 240

Query: 241 PAKGLPRRLGGDAXXXXXXXXXXXXXXXXXXXXRLVLMSYAPDFFKVSVDIAKETWIVGG 300
           PAKGLPRRLGGDA                    RLVLMSYAPDFFKVSVDIAKETWIVGG
Sbjct: 241 PAKGLPRRLGGDAEEEVIKNSKKEEEEEDEKEERLVLMSYAPDFFKVSVDIAKETWIVGG 300

Query: 301 DDAVLRCRSWKR 312
           DDAVLRCRSWKR
Sbjct: 301 DDAVLRCRSWKR 312



>Os09g0370000 Conserved hypothetical protein
          Length = 374

 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 152/356 (42%), Gaps = 52/356 (14%)

Query: 7   SNGAATDLLVCFPSRAHLALMPPKAICSPSRPSASEPVKRRHSTSRSGPPPPSAALFKAA 66
           +  A TDLLVCFP R HLALMP K ICSPSR +  + V  R    +    P + +     
Sbjct: 21  TTTAPTDLLVCFPPRQHLALMP-KPICSPSRTTVDKAVAARRRRQQQQQLPAARSGGGGG 79

Query: 67  ASG---------RNPSRRAADVPVDNEPSSPKVTCAGQIKARRPXXXXXX---------- 107
             G         R    + A V VD+EP SPKVTC GQIK  RP                
Sbjct: 80  GRGRGSTSSPLFRGSKAKQAAVEVDDEPQSPKVTCVGQIKVARPKKQRKVAGKPGNGGGG 139

Query: 108 -----------XXXXXXXXXXXXXXXXTWLQALGIKKDALPFLNAVHGAFRLNVAGCFGS 156
                                      +WL+A+GI++DALPFL     + RL V  CFGS
Sbjct: 140 GGGGGGGRSWITVVEEIERLHEQRKKVSWLEAVGIRRDALPFLGGALRSLRLKVR-CFGS 198

Query: 157 FPGAVVEYTS----------GXXXXXXXLAAGKDTEHGAALAKWFMVLEEGKKVSSRKRX 206
             GAV   T           G        A    +   +  +KW MVLE  ++   +   
Sbjct: 199 LHGAVESSTDDEDDDDDDGRGAEEHEAVSAGCGGSAASSVFSKWLMVLEGSEETPEQDSG 258

Query: 207 XXXXXXXXXXXXX-XXXADVAPPANALMLMRCRSAPAKGLPRRLG-------GDAXXXXX 258
                               APPANAL+LMRCRSAPAKGL RR         G+A     
Sbjct: 259 DDEEEPEREDDDECSNAPPSAPPANALLLMRCRSAPAKGLARRRTEEPPPPVGEAVHDEG 318

Query: 259 XXXXXXXXXXXXXXXR--LVLMSYAPDFFKVSVDIAKETWIVGGDDAVLRCRSWKR 312
                          R  LV M  APDF K+S+DIAKETWIVGG D + R RSWKR
Sbjct: 319 SAAAAAAGDDGAEEERDELVFMRTAPDFLKLSIDIAKETWIVGGVDPLARSRSWKR 374



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,427,811
Number of extensions: 413395
Number of successful extensions: 3968
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3962
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)