FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0370000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.0473) R2 : 0.674
β1 : 1.25 (0.173) R2dD : 0.039 R2D : 0.037
β2 : 1.81 (0.123) R2dC : 0.179 R2C : 0.35
β3 : 2.45 (0.136) R2dE : 0.273 R2E : 0.448
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.391 (0.101) R2dN8 : 0.0175 R2N8 : 0.00257
σ : 0.882
deviance : 358.94
__
_____
C
peak time of C : 22.4
E
wheather : radiation
threshold : 0.4747
memory length : 66
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.26e-05
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
336.21 0.862 4.14 1.29 1.31 2.82 0.216 2.59 0.512 20.7 0.6975 83 1.92 --
349.82 0.871 4.17 1.36 1.75 2.25 1.52 -- 0.445 22.7 0.4232 68 0.501 --
335.45 0.853 4.14 1.37 1.37 2.81 -- 2.81 0.543 20.9 0.4802 81 1.56 --
358.94 0.882 4.19 1.25 1.81 2.45 -- -- 0.391 22.4 0.4747 66 5.26e-05 --
355.32 0.878 4.11 1.28 -- 2.96 -- 2.25 0.443 -- 6.96 16 4.15 --
446.06 0.99 4.18 1.34 3.05 -- 2.12 -- 0.369 0.616 -- -- -- --
465.24 1.01 4.19 1.26 3.04 -- -- -- 0.359 0.584 -- -- -- --
376.06 0.903 4.11 1.26 -- 2.95 -- -- 0.509 -- 7.056 23 4.16 --
401.04 0.933 4.2 -- 1.8 2.52 -- -- 0.315 22.2 0.4495 70 5.4e-05 --
1046.3 1.51 4.13 1.36 -- -- -- -- 0.411 -- -- -- -- --
506.83 1.05 4.22 -- 3.06 -- -- -- 0.219 0.604 -- -- -- --
417.55 0.952 4.14 -- -- 2.97 -- -- 0.374 -- 7.74 23 4.17 --
1095.32 1.54 4.16 -- -- -- -- -- 0.26 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 332.44 radiation 40.0 90 < th dose dependent rect. 15 14
2 332.73 temperature 15.0 90 > th dose dependent rect. 23 6
4 336.05 humidity 50.0 90 > th dose dependent rect. 15 14
6 337.80 temperature 20.0 90 > th dose independent rect. 2 3
7 337.87 radiation 1.0 90 < th dose dependent sin 8 NA
15 339.53 temperature 20.0 30 > th dose dependent rect. 2 3
17 339.88 temperature 20.0 90 > th dose independent rect. 24 5
30 343.07 temperature 20.0 270 > th dose dependent rect. 24 2
35 344.48 wind 3.0 30 < th dose dependent rect. 24 5
39 344.67 radiation 1.0 30 < th dose dependent sin 4 NA
40 344.86 wind 3.0 30 < th dose dependent rect. 2 3
43 345.34 radiation 1.0 90 < th dose independent sin 9 NA
51 346.06 radiation 1.0 90 > th dose independent sin 9 NA
52 346.11 temperature 20.0 90 > th dose independent rect. 9 20
54 346.56 temperature 30.0 90 < th dose independent rect. 15 14
65 347.68 wind 3.0 90 < th dose independent rect. 2 3
66 347.74 wind 9.0 90 < th dose dependent rect. 15 14
71 348.04 temperature 10.0 90 > th dose dependent rect. 5 4
72 348.35 precipitation 0.1 90 < th dose independent rect. 5 4
73 348.35 precipitation 0.1 90 < th dose dependent rect. 5 4
74 348.48 wind 9.0 90 < th dose independent rect. 5 4
75 348.48 temperature 10.0 90 > th dose independent rect. 5 4
77 348.48 humidity 50.0 90 > th dose independent rect. 5 4
78 348.48 atmosphere 995.0 90 > th dose independent rect. 5 4
79 348.48 atmosphere 1015.0 90 < th dose independent rect. 5 4
80 348.48 temperature 10.0 90 > th dose independent rect. 9 20
85 348.83 radiation 1.0 30 < th dose independent sin 5 NA
87 349.25 wind 9.0 90 < th dose dependent rect. 5 4
88 349.26 radiation 40.0 90 < th dose independent rect. 5 4
91 349.47 atmosphere 995.0 90 > th dose independent rect. 9 20
93 349.57 temperature 30.0 90 < th dose independent rect. 5 4
97 349.96 radiation 1.0 30 > th dose independent sin 5 NA
103 350.22 wind 3.0 90 < th dose independent rect. 24 5
104 350.22 humidity 80.0 30 > th dose dependent rect. 2 3
115 350.98 precipitation 0.1 90 < th dose independent rect. 9 20
116 350.98 precipitation 0.1 90 < th dose dependent rect. 9 20
117 351.00 atmosphere 1015.0 90 < th dose independent rect. 9 20
121 351.12 temperature 10.0 270 > th dose dependent rect. 5 1
125 351.20 wind 9.0 90 < th dose independent rect. 9 20
142 352.41 radiation 1.0 90 > th dose independent rect. 18 15
146 352.58 humidity 80.0 270 > th dose independent rect. 5 1
147 352.58 humidity 60.0 90 > th dose independent rect. 16 13
148 352.70 temperature 10.0 720 > th dose dependent rect. 17 2
155 353.18 temperature 20.0 270 > th dose independent rect. 24 2
163 353.49 temperature 25.0 720 > th dose independent rect. 17 2
165 353.57 humidity 80.0 30 > th dose independent rect. 2 3
171 353.69 humidity 50.0 90 > th dose dependent rect. 5 4
172 353.74 radiation 1.0 90 > th dose independent rect. 4 5
195 354.37 temperature 20.0 720 > th dose dependent rect. 17 2
210 355.10 wind 9.0 90 < th dose independent rect. 5 21
214 355.16 humidity 50.0 90 > th dose dependent rect. 5 6
218 355.35 precipitation 0.1 270 < th dose independent rect. 5 1
219 355.35 precipitation 0.1 90 < th dose independent rect. 2 3
220 355.35 precipitation 0.1 270 < th dose dependent rect. 5 1
221 355.35 precipitation 0.1 90 < th dose dependent rect. 2 3
222 355.39 radiation 40.0 90 < th dose dependent rect. 5 4
223 355.47 wind 7.0 270 < th dose independent rect. 5 1
225 355.47 temperature 10.0 270 > th dose independent rect. 5 1
227 355.47 temperature 30.0 270 < th dose independent rect. 5 1
228 355.47 humidity 50.0 270 > th dose independent rect. 5 1
231 355.47 atmosphere 995.0 270 > th dose independent rect. 5 1
232 355.47 atmosphere 1015.0 270 < th dose independent rect. 5 1
233 355.47 radiation 20.0 270 < th dose independent rect. 5 1
236 355.47 temperature 10.0 270 > th dose independent rect. 6 23
245 356.10 temperature 20.0 90 > th dose independent rect. 11 18
250 356.21 humidity 60.0 90 > th dose dependent rect. 23 6
252 356.27 radiation 20.0 90 < th dose independent rect. 15 14
256 356.38 radiation 1.0 90 < th dose independent rect. 2 3
259 356.38 radiation 10.0 90 < th dose dependent rect. 2 3
270 356.55 temperature 10.0 90 > th dose independent rect. 2 3
272 356.55 temperature 30.0 90 < th dose independent rect. 2 3
273 356.55 humidity 50.0 90 > th dose independent rect. 2 3
276 356.55 atmosphere 995.0 90 > th dose independent rect. 2 3
277 356.55 atmosphere 1010.0 90 < th dose independent rect. 2 3
282 356.55 temperature 10.0 90 > th dose independent rect. 5 21
284 356.58 radiation 40.0 270 < th dose dependent rect. 5 1
302 357.24 radiation 40.0 90 < th dose dependent rect. 11 18
331 357.66 humidity 50.0 270 > th dose dependent rect. 5 1
332 357.70 wind 9.0 270 < th dose dependent rect. 5 1
342 358.07 humidity 60.0 90 > th dose independent rect. 5 6
346 358.16 temperature 15.0 90 > th dose dependent rect. 20 9
351 358.29 radiation 1.0 30 < th dose independent rect. 2 15
369 358.86 radiation 40.0 90 < th dose independent rect. 5 6
371 358.89 wind 9.0 90 < th dose dependent rect. 5 6
391 359.58 wind 1.0 90 > th dose independent rect. 5 4
394 359.59 radiation 1.0 30 < th dose dependent rect. 2 10
397 359.61 atmosphere 1015.0 30 < th dose dependent rect. 2 3
435 360.32 radiation 10.0 10 < th dose dependent rect. 14 16
454 360.71 atmosphere 995.0 90 > th dose independent rect. 15 14
510 361.38 radiation 1.0 30 < th dose independent rect. 2 10
512 361.38 precipitation 0.1 270 < th dose independent rect. 7 22
513 361.38 precipitation 0.1 270 < th dose dependent rect. 7 22
534 361.56 atmosphere 995.0 90 > th dose independent rect. 11 18
543 361.65 radiation 1.0 720 < th dose dependent rect. 17 7
544 361.68 atmosphere 995.0 90 > th dose dependent rect. 5 4
554 361.83 radiation 10.0 10 < th dose dependent rect. 24 6
588 362.15 radiation 1.0 30 < th dose independent rect. 24 6
599 362.45 radiation 40.0 90 < th dose dependent rect. 5 6
608 362.66 wind 9.0 90 < th dose independent rect. 5 6
609 362.66 temperature 10.0 90 > th dose independent rect. 5 6
610 362.66 atmosphere 995.0 90 > th dose independent rect. 5 6
611 362.66 atmosphere 1015.0 90 < th dose independent rect. 5 6
612 362.66 temperature 10.0 90 > th dose independent rect. 11 18
614 362.70 precipitation 0.1 90 < th dose independent rect. 5 6
616 362.70 precipitation 0.1 90 < th dose dependent rect. 5 6
652 363.13 precipitation 0.1 30 < th dose independent rect. 5 21
655 363.13 precipitation 0.1 30 < th dose dependent rect. 5 21
660 363.21 radiation 1.0 30 < th dose independent rect. 24 17
676 363.51 humidity 50.0 90 > th dose independent rect. 5 10
708 363.88 wind 9.0 90 < th dose dependent rect. 5 10
714 364.02 precipitation 0.1 90 < th dose independent rect. 11 18
716 364.02 precipitation 0.1 90 < th dose dependent rect. 11 18
725 364.21 wind 9.0 90 < th dose dependent rect. 19 10
734 364.59 temperature 30.0 90 < th dose independent rect. 11 18
735 364.61 radiation 20.0 90 < th dose independent rect. 5 6
741 364.68 humidity 50.0 90 > th dose dependent rect. 11 18
742 364.77 wind 9.0 90 < th dose independent rect. 5 10
755 364.79 wind 9.0 90 < th dose independent rect. 11 18
799 365.40 atmosphere 1015.0 90 < th dose independent rect. 11 18
802 365.46 precipitation 0.1 90 < th dose independent rect. 5 10
804 365.46 precipitation 0.1 90 < th dose dependent rect. 5 10
809 365.55 temperature 10.0 90 > th dose independent rect. 5 10
810 365.55 atmosphere 1015.0 90 < th dose independent rect. 5 10
811 365.55 temperature 10.0 90 > th dose independent rect. 15 14
812 365.55 temperature 10.0 720 > th dose dependent rect. 16 4
827 365.74 radiation 1.0 720 > th dose independent rect. 17 1
838 365.96 temperature 20.0 90 > th dose independent rect. 20 9
839 365.99 temperature 30.0 90 < th dose independent rect. 9 20
888 366.43 radiation 40.0 90 < th dose dependent rect. 9 20
901 366.78 radiation 1.0 30 < th dose dependent rect. 24 12
909 366.86 wind 9.0 90 < th dose independent rect. 15 14
921 367.05 precipitation 0.1 90 < th dose independent rect. 15 14
922 367.05 precipitation 0.1 90 < th dose dependent rect. 15 14
940 367.35 atmosphere 995.0 270 > th dose dependent rect. 5 1
950 367.65 wind 1.0 270 > th dose independent rect. 5 1
952 367.65 wind 5.0 90 < th dose independent rect. 15 14
963 367.80 temperature 30.0 90 < th dose independent rect. 5 6
982 367.98 atmosphere 995.0 90 > th dose dependent rect. 2 3
986 368.10 atmosphere 995.0 90 > th dose independent rect. 5 10