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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0753400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0135) R2 : 0.000569
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0145 (0.0285) R2dN8 : 0.000735 R2N8 : 0.000569
σ : 0.255
deviance : 29.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.98 0.249 3.08 0.0702 0.119 -0.142 -0.156 -0.583 -0.0231 6.24 70.41 4463 -- --
28.45 0.248 3.08 0.0591 0.126 -0.145 -0.161 -- -0.0238 6.46 70 4410 -- --
27.93 0.246 3.09 0.0724 0.132 -0.14 -- -0.543 -0.0314 6.61 72 6014 -- --
28.05 0.247 3.09 0.0659 0.133 -0.213 -- -- -0.0964 6.58 86.96 7284 -- --
28.65 0.249 3.09 0.0842 -- -0.126 -- -0.652 -0.0215 -- 70 5857 -- --
28.93 0.252 3.08 0.0368 0.118 -- -0.168 -- -0.0134 6.18 -- -- -- --
28.97 0.252 3.08 0.0357 0.119 -- -- -- -0.0125 6.85 -- -- -- --
28.74 0.25 3.1 0.0846 -- -0.237 -- -- -0.106 -- 86.86 6996 -- --
28.19 0.247 3.1 -- 0.121 -0.206 -- -- -0.105 6.81 86.56 7268 -- --
29.71 0.255 3.08 0.0383 -- -- -- -- -0.0103 -- -- -- -- --
29.01 0.252 3.08 -- 0.119 -- -- -- -0.0165 6.84 -- -- -- --
28.9 0.25 3.1 -- -- -0.216 -- -- -0.111 -- 85.84 6985 -- --
29.75 0.255 3.08 -- -- -- -- -- -0.0145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.36 atmosphere 1000.0 10 > th dose independent rect. 3 23
3 24.54 atmosphere 1005.0 90 > th dose dependent rect. 2 1
6 24.76 atmosphere 1010.0 10 < th dose dependent rect. 2 1
7 24.77 atmosphere 1005.0 10 > th dose dependent rect. 2 2
8 24.81 humidity 90.0 10 > th dose dependent rect. 2 1
14 25.03 temperature 25.0 90 > th dose independent rect. 1 1
15 25.03 humidity 90.0 10 > th dose independent rect. 2 1
16 25.04 wind 3.0 10 < th dose independent rect. 2 1
18 25.05 wind 1.0 30 > th dose independent rect. 2 1
19 25.05 temperature 20.0 10 > th dose independent rect. 2 1
27 25.09 temperature 10.0 10 > th dose independent rect. 2 1
29 25.09 temperature 30.0 10 < th dose independent rect. 2 1
30 25.09 humidity 50.0 10 > th dose independent rect. 2 1
34 25.09 atmosphere 995.0 10 > th dose independent rect. 2 1
35 25.09 atmosphere 1010.0 10 < th dose independent rect. 2 1
37 25.09 radiation 1.0 10 < th dose independent rect. 2 1
42 25.09 precipitation 0.1 10 < th dose independent rect. 2 1
43 25.09 temperature 10.0 10 > th dose independent rect. 3 23
44 25.09 wind 7.0 10 < th dose dependent rect. 2 1
46 25.09 radiation 1.0 10 < th dose dependent rect. 2 1
51 25.09 precipitation 0.1 10 < th dose dependent rect. 2 1
55 25.11 temperature 10.0 10 > th dose dependent rect. 2 1
56 25.11 temperature 30.0 30 < th dose dependent rect. 2 1
66 25.12 temperature 25.0 90 > th dose dependent rect. 1 2
109 25.18 radiation 1.0 14400 < th dose dependent rect. 3 1
115 25.21 precipitation 0.1 10 < th dose independent rect. 3 23
118 25.21 precipitation 0.1 10 < th dose dependent rect. 3 23
123 25.23 wind 9.0 1440 < th dose independent rect. 3 1
124 25.23 temperature 10.0 1440 > th dose independent rect. 3 1
127 25.23 temperature 30.0 1440 < th dose independent rect. 3 1
131 25.23 humidity 50.0 1440 > th dose independent rect. 3 1
140 25.23 atmosphere 995.0 1440 > th dose independent rect. 3 1
141 25.23 radiation 1.0 1440 < th dose independent rect. 3 1
161 25.23 temperature 10.0 1440 > th dose independent rect. 4 23
187 25.52 wind 9.0 30 < th dose independent rect. 3 23
210 25.83 humidity 50.0 30 > th dose independent rect. 3 23
248 26.03 humidity 90.0 90 < th dose independent rect. 2 1
291 26.40 atmosphere 995.0 720 > th dose independent rect. 23 16
337 26.74 temperature 30.0 30 < th dose independent rect. 3 23
347 26.78 precipitation 0.1 720 < th dose independent rect. 15 8
348 26.78 precipitation 0.1 720 < th dose dependent rect. 15 8
356 26.81 atmosphere 1000.0 720 > th dose independent rect. 3 8
365 26.83 atmosphere 995.0 30 > th dose dependent rect. 3 23
367 26.84 temperature 10.0 720 > th dose independent rect. 15 8
368 26.84 temperature 10.0 720 > th dose independent rect. 23 16
370 26.86 wind 1.0 30 < th dose independent rect. 21 6
388 26.89 precipitation 0.1 720 < th dose independent rect. 11 16
390 26.89 precipitation 0.1 720 < th dose dependent rect. 11 16
392 26.90 temperature 10.0 720 > th dose independent rect. 3 8
394 26.90 temperature 10.0 720 > th dose independent rect. 11 16
397 26.91 wind 1.0 90 > th dose independent rect. 3 23
410 26.95 wind 1.0 90 < th dose independent rect. 13 14
411 26.95 wind 1.0 90 < th dose independent rect. 11 16
416 26.97 wind 9.0 720 < th dose independent rect. 3 8
419 26.98 humidity 50.0 720 > th dose independent rect. 3 8
438 27.01 atmosphere 1015.0 30 < th dose independent rect. 3 23
477 27.04 wind 9.0 30 < th dose dependent rect. 3 23
482 27.06 radiation 40.0 720 < th dose independent rect. 15 8
495 27.10 atmosphere 995.0 720 > th dose independent rect. 7 8
531 27.13 radiation 10.0 30 < th dose dependent rect. 3 23
540 27.16 wind 1.0 90 < th dose dependent rect. 13 14
562 27.21 atmosphere 995.0 720 > th dose independent rect. 15 8
566 27.21 wind 1.0 90 < th dose dependent rect. 15 12
758 27.30 wind 9.0 720 < th dose independent rect. 15 8
764 27.31 temperature 25.0 270 > th dose independent rect. 23 4
768 27.31 wind 1.0 30 > th dose dependent rect. 2 1
779 27.33 atmosphere 1000.0 90 > th dose independent rect. 14 11
780 27.33 precipitation 0.1 720 < th dose independent rect. 15 16
786 27.33 precipitation 0.1 720 < th dose dependent rect. 15 16
793 27.35 atmosphere 1015.0 720 < th dose independent rect. 3 8
797 27.36 atmosphere 1000.0 10 > th dose independent rect. 16 10
799 27.36 radiation 10.0 30 < th dose independent rect. 3 23
820 27.39 wind 9.0 720 < th dose independent rect. 19 8
827 27.40 precipitation 0.1 720 < th dose independent rect. 19 8
828 27.40 wind 1.0 90 > th dose independent rect. 15 10
832 27.40 precipitation 0.1 720 < th dose dependent rect. 19 8
835 27.41 radiation 1.0 720 > th dose independent rect. 14 1
878 27.43 temperature 10.0 720 > th dose independent rect. 7 8
879 27.43 atmosphere 1015.0 720 < th dose independent rect. 7 8
881 27.43 temperature 10.0 720 > th dose independent rect. 15 16
888 27.44 atmosphere 1000.0 10 > th dose independent rect. 14 12
889 27.44 humidity 90.0 90 < th dose dependent rect. 2 1
895 27.45 radiation 30.0 90 < th dose independent rect. 15 10
896 27.45 radiation 40.0 720 < th dose independent rect. 15 16
899 27.45 humidity 80.0 14400 < th dose dependent rect. 3 6
904 27.46 temperature 10.0 720 > th dose independent rect. 19 8
905 27.46 temperature 30.0 720 < th dose independent rect. 19 8
906 27.46 humidity 50.0 720 > th dose independent rect. 19 8
907 27.46 atmosphere 995.0 720 > th dose independent rect. 19 8
908 27.46 radiation 1.0 720 < th dose independent rect. 19 8
913 27.46 atmosphere 1000.0 90 > th dose independent rect. 3 9
914 27.46 temperature 10.0 720 > th dose independent rect. 3 16
918 27.46 radiation 1.0 720 < th dose dependent rect. 19 8
962 27.48 radiation 40.0 90 < th dose dependent rect. 15 10
967 27.49 humidity 60.0 90 > th dose independent rect. 14 11
973 27.49 wind 3.0 30 < th dose dependent rect. 2 6
974 27.49 atmosphere 995.0 30 > th dose dependent rect. 14 12
977 27.49 humidity 50.0 30 > th dose dependent rect. 3 23
985 27.50 wind 3.0 90 < th dose dependent rect. 6 21