BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0753400 Os02g0753400|J065121H03
         (312 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78110.1  | chr1:29391879-29392907 FORWARD LENGTH=343          130   8e-31
AT1G22230.1  | chr1:7850093-7851037 FORWARD LENGTH=315             99   3e-21

>AT1G78110.1 | chr1:29391879-29392907 FORWARD LENGTH=343
          Length = 342

 Score =  130 bits (327), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 144/348 (41%), Gaps = 52/348 (14%)

Query: 3   GGRGSN--GAATDLLVCFPSRAHLALMPPKAICSPSRPSASEPVKRRHS-------TSRS 53
           G RGS+  G + DLLVCFPSR HLAL P K ICSPSRPS S   +R H        +   
Sbjct: 7   GNRGSSSSGYSADLLVCFPSRTHLALTP-KPICSPSRPSDSSTNRRPHHRRQLSKLSGGG 65

Query: 54  GPPPPSAALFKAAASGRNPSRRAADVPVDNEPSSPKVTCAGQIKARRPXXXXXXXXXXXX 113
           G    S  L+   AS +N      D     EP+SPKVTCAGQIK R P            
Sbjct: 66  GGGHGSPVLWAKQASSKN---MGGDEIA--EPTSPKVTCAGQIKVR-PSKCGGRGKNWQS 119

Query: 114 XXXXXXXXXXTWLQA--LGIKKDALPFLNAVHGA---FRLNVAGCFGSFPGAVV------ 162
                        Q+   G+KKD + FL  +      FR     CFG F  A V      
Sbjct: 120 VMEEIERIHDNRSQSKFFGLKKDVMGFLTCLRNIKFDFR-----CFGDFRHADVTSDDDE 174

Query: 163 EYTSGXXXXXXXLAAGKDTEHGAALAKWFMVLEEGKKVSSRKRXXXXXXXXXXXXXXXXX 222
           E           +   ++       +KWFMVL+E +      +                 
Sbjct: 175 EEDDDDDEEEEVVEGEEEENSKTVFSKWFMVLQEEQNNKDDDKNNNKCDEKRDLEDTETE 234

Query: 223 ADVAPPANALMLMRCRSAPAKG-LPRRL-----------------GGDAXXXXXXXXXXX 264
             V PP NAL+LMRCRSAPAK  L  R+                   D            
Sbjct: 235 PAVPPP-NALLLMRCRSAPAKSWLEERMKVKTEQEKREEQKEEKETEDQETSMKTKKKDL 293

Query: 265 XXXXXXXXXRLVLMSYAPDFFKVSVDIAKETWIVGG-DDAVLRCRSWK 311
                     LVLM Y  +F+++S DIAKETW+VGG  D + R RSWK
Sbjct: 294 RSLMEEEKMELVLMRYDTEFYRLSSDIAKETWVVGGIQDPLSRSRSWK 341



>AT1G22230.1 | chr1:7850093-7851037 FORWARD LENGTH=315
          Length = 314

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 125/326 (38%), Gaps = 48/326 (14%)

Query: 11  ATDLLVCFPSRAHLALMPPKAICSPSRPSASEPVKRRHSTSRSGPPPPSAALFKAAASGR 70
           + DL+VCFPSRAHL+L            S S    RR +      P    ++ K ++SG 
Sbjct: 13  SADLMVCFPSRAHLSLPSKSI------SSPSSSFNRRQNA-----PHHRRSISKLSSSGG 61

Query: 71  NP-SRRAADVPVDNEPSSPKVTCAGQIKARRPXXXXXXXX-XXXXXXXXXXXXXXTWLQA 128
                R     V  EP+SPKVTCAGQIK R                         +  + 
Sbjct: 62  GVRQNRGGGREVVEEPTSPKVTCAGQIKVRSSKRDGGGKNWQSLMAEIEKIHRSKSESKF 121

Query: 129 LGIKKDALPFLNAVHG-AFRLNVAGCFGSFPGAVV---EYTSGXXXXXXXLAAGKDTEHG 184
            GIK+D + FL  +    FR     CFG+FP   +   +               +D   G
Sbjct: 122 FGIKRDVMGFLTCLRDFDFR-----CFGAFPPVDIISDDEEEDEEEEEEDEEEDEDESSG 176

Query: 185 AALAKWFMVLEEGKKVSSRKRXXXXXXXXXXXXXXXXXADVAPPANALMLMRCRSAPAKG 244
              +KW MVL E        +                     PP NAL+LMRCRSAP K 
Sbjct: 177 TVFSKWLMVLHE--------KQNNEECVDGKENVFSDVETAVPPPNALLLMRCRSAPVKN 228

Query: 245 LP-----RRLGGDAXXXXX------------XXXXXXXXXXXXXXXRLVLMSYAPDFFKV 287
                      GD                                  LV+M+Y  +++K+
Sbjct: 229 WSEEKKEETEEGDNRVKQSGEEEEEEKDRVGNKKDLRSLMEEEKKMNLVVMNYDTNYYKL 288

Query: 288 SVDIAKETWIVGG-DDAVLRCRSWKR 312
           S DIAKETW+VGG  D + R RSWK+
Sbjct: 289 SNDIAKETWVVGGIQDPLFRSRSWKK 314



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,780,723
Number of extensions: 194801
Number of successful extensions: 938
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 935
Number of HSP's successfully gapped: 5
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)