BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0744900 Os02g0744900|AK061968
         (463 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0744900  Similar to Geranylgeranyl reductase (Fragment)      828   0.0  
AK108809                                                          583   e-166
Os01g0265000  Geranylgeranyl reductase family protein             452   e-127
Os04g0561400                                                       84   2e-16

>Os02g0744900 Similar to Geranylgeranyl reductase (Fragment)
          Length = 463

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/430 (94%), Positives = 408/430 (94%)

Query: 34  LVTRAAASSPKLPSGRRLRXXXXXXXXXXXXXXXXXXXXXXETVLIERKLDNCKPCGGAI 93
           LVTRAAASSPKLPSGRRLR                      ETVLIERKLDNCKPCGGAI
Sbjct: 34  LVTRAAASSPKLPSGRRLRVAVVGGGPAGGAAAEALAKGGVETVLIERKLDNCKPCGGAI 93

Query: 94  PLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRA 153
           PLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRA
Sbjct: 94  PLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRA 153

Query: 154 EGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSR 213
           EGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSR
Sbjct: 154 EGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSR 213

Query: 214 VAKDMGAGDYEYAIAFQERVKIPDDKMKYYEERAEMYVGDDVSPDFYGWVFPKCDHVAVG 273
           VAKDMGAGDYEYAIAFQERVKIPDDKMKYYEERAEMYVGDDVSPDFYGWVFPKCDHVAVG
Sbjct: 214 VAKDMGAGDYEYAIAFQERVKIPDDKMKYYEERAEMYVGDDVSPDFYGWVFPKCDHVAVG 273

Query: 274 TGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAGY 333
           TGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAGY
Sbjct: 274 TGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAGY 333

Query: 334 VTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRRYLAEFDRLYWPTYKVLDVL 393
           VTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRRYLAEFDRLYWPTYKVLDVL
Sbjct: 334 VTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRRYLAEFDRLYWPTYKVLDVL 393

Query: 394 QKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATA 453
           QKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATA
Sbjct: 394 QKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATA 453

Query: 454 LRREMEKVTL 463
           LRREMEKVTL
Sbjct: 454 LRREMEKVTL 463



>AK108809 
          Length = 507

 Score =  583 bits (1502), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 278/381 (72%), Positives = 316/381 (82%), Gaps = 3/381 (0%)

Query: 75  ETVLIERKLDNCKPCGGAIPLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPH 134
           E  LIERKLDNCKPCGGAIPLCMV EFDLP +++DRKV KMKMISPSN  VD+G TL+  
Sbjct: 105 EAYLIERKLDNCKPCGGAIPLCMVQEFDLPQEIIDRKVTKMKMISPSNREVDVGRTLSET 164

Query: 135 EYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGG 194
           EYIGM RREV+DAYLR RAE  GA VVNGL +R E P E +G   +HYN Y  ++G   G
Sbjct: 165 EYIGMCRREVMDAYLRDRAEKLGANVVNGLMMRMEQP-EADGPITIHYNGY--TDGSKIG 221

Query: 195 EKRTFEVDAIVGADGANSRVAKDMGAGDYEYAIAFQERVKIPDDKMKYYEERAEMYVGDD 254
             +T EVD ++GA+GANSRVAK++ AG+Y+YAIAFQER++IPDDKMK+YE  AEMYVGDD
Sbjct: 222 TPQTLEVDMVIGANGANSRVAKEIDAGEYDYAIAFQERIRIPDDKMKHYENLAEMYVGDD 281

Query: 255 VSPDFYGWVFPKCDHVAVGTGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHPIPEH 314
           VSPDFYGWVFPK DHVAVGTGTV +K  IK++Q ATR R+K + EGGKIIRVEAHPIPEH
Sbjct: 282 VSPDFYGWVFPKYDHVAVGTGTVVNKTAIKQYQQATRDRSKVKTEGGKIIRVEAHPIPEH 341

Query: 315 PRPKRVAGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRR 374
           PRP+R  GR+ LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIV  S NG +M  ES +R 
Sbjct: 342 PRPRRCKGRIALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEASENGKKMCGESAIRN 401

Query: 375 YLAEFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNP 434
           YL ++DR YW TYKVLD+LQKVFYRSN AREAFVEMC D YVQ+MTFDSYLYK VVPGNP
Sbjct: 402 YLDKWDRKYWATYKVLDILQKVFYRSNPAREAFVEMCEDSYVQKMTFDSYLYKTVVPGNP 461

Query: 435 LDDIKLAVNTIGSLVRATALR 455
           LDD+KL VNT+ S+VRA ALR
Sbjct: 462 LDDVKLLVNTVASIVRANALR 482



>Os01g0265000 Geranylgeranyl reductase family protein
          Length = 457

 Score =  452 bits (1164), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/430 (53%), Positives = 294/430 (68%), Gaps = 5/430 (1%)

Query: 34  LVTRAAASSPKLPSGRRLRXXXXXXXXXXXXXXXXXXXXXXETVLIERKLDNCKPCGGAI 93
           LV   ++S+   P  R LR                      +  L+ER     KPCGGAI
Sbjct: 16  LVVTCSSSATPAPPRRPLRVAVVGGGPAGASAAEALASAGAQAFLLERNPSGAKPCGGAI 75

Query: 94  PLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRA 153
           PLCM+ EF +P DLVDR+V +M+++SPSN+A D    L P  +I M+RREVLD++LR RA
Sbjct: 76  PLCMLDEFAIPRDLVDRRVTRMRVLSPSNLAADFSRALPPGAHIPMLRREVLDSFLRRRA 135

Query: 154 EGAGAEVVNGLFLRYEAPKEP-NGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANS 212
             AGA +V GL      P +P    Y+VHY    S +G     +   EVDA++GADGANS
Sbjct: 136 ADAGATLVPGLVTSLSLPADPATDPYLVHY--ISSDSGGPSSSRCVLEVDAVIGADGANS 193

Query: 213 RVAKDMGAGDYEYAIAFQERVKIPDDKMKYYEERAEMYVGDDVSPDFYGWVFPKCDHVAV 272
           RVA+++GAGDY  AIAFQER+++PD+ M YY++ AEMYVG DVSPDFYGWVFPKCDHVAV
Sbjct: 194 RVAREVGAGDYSTAIAFQERIRLPDEAMAYYDDLAEMYVGGDVSPDFYGWVFPKCDHVAV 253

Query: 273 GTGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAG 332
           GTGTV  KP+IK+ Q+  R RA  ++ GG+++RVEAHPIPEHPRP+RV GRV LVGDAAG
Sbjct: 254 GTGTVAAKPEIKRLQSGIRARAAGKVAGGRVVRVEAHPIPEHPRPRRVVGRVALVGDAAG 313

Query: 333 YVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRR-YLAEFDRLYWPTYKVLD 391
           YVT+CSGEGIYFAA+SGR+C  A+ A     T  V E+ +R  YL  +D  + PT++ LD
Sbjct: 314 YVTRCSGEGIYFAARSGRLCGRAM-ADEWRLTGAVTEAGIRAGYLRRWDDEFRPTFRFLD 372

Query: 392 VLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRA 451
           +LQ+VFY  NA REA VEMCAD++VQR TFDSYL+KR+ P  P  D++L   T  ++VR 
Sbjct: 373 LLQRVFYGGNAGREALVEMCADEHVQRRTFDSYLHKRMAPAEPWGDLRLLWRTAAAMVRC 432

Query: 452 TALRREMEKV 461
             L RE+E++
Sbjct: 433 GVLGREVERL 442



>Os04g0561400 
          Length = 203

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 56/87 (64%)

Query: 75  ETVLIERKLDNCKPCGGAIPLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPH 134
           +  L+ER     KPCGGAIPLCM++EF +P   V+  V +M+++SPSN+A D    L P 
Sbjct: 58  DAFLLERNSSGAKPCGGAIPLCMLNEFAIPHVHVNHFVTRMRVLSPSNLAADFSYALPPS 117

Query: 135 EYIGMVRREVLDAYLRSRAEGAGAEVV 161
             I M+R E+LD+ LR RA  A A +V
Sbjct: 118 APIPMLRHEMLDSVLRRRAAYASATLV 144



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,664,704
Number of extensions: 660151
Number of successful extensions: 1599
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1595
Number of HSP's successfully gapped: 4
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)