Os01g0265000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Geranylgeranyl reductase family protein.
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Os01g0265000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Geranylgeranyl reductase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.08 | 0.361 | 9.8 | 2 | 0.455 | -1.53 | -1.43 | -0.429 | 0.175 | 22.4 | 20.98 | 975 | -- | -- |
| 59.19 | 0.358 | 9.81 | 1.98 | 0.452 | -1.36 | -1.37 | -- | 0.163 | 22.4 | 21.39 | 912 | -- | -- |
| 66.43 | 0.38 | 9.81 | 1.97 | 0.459 | -1.26 | -- | 0.617 | 0.166 | 22.2 | 21.4 | 885 | -- | -- |
| 66.74 | 0.38 | 9.8 | 2.02 | 0.455 | -1.44 | -- | -- | 0.17 | 22.1 | 21.13 | 911 | -- | -- |
| 78.22 | 0.412 | 9.81 | 1.94 | -- | -1.42 | -- | 0.427 | 0.1 | -- | 22.4 | 854 | -- | -- |
| 76.72 | 0.411 | 9.77 | 2.31 | 0.557 | -- | -1.48 | -- | 0.324 | 22.7 | -- | -- | -- | -- |
| 85.73 | 0.434 | 9.77 | 2.37 | 0.567 | -- | -- | -- | 0.33 | 22.5 | -- | -- | -- | -- |
| 78.38 | 0.412 | 9.8 | 1.98 | -- | -1.54 | -- | -- | 0.12 | -- | 22.14 | 851 | -- | -- |
| 98.75 | 0.463 | 9.94 | -- | 0.543 | -1.91 | -- | -- | -0.432 | 22.4 | 23.4 | 47520 | -- | -- |
| 105.45 | 0.48 | 9.75 | 2.38 | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
| 234.39 | 0.716 | 9.83 | -- | 0.584 | -- | -- | -- | 0.065 | 22.8 | -- | -- | -- | -- |
| 116.72 | 0.503 | 9.93 | -- | -- | -1.91 | -- | -- | -0.453 | -- | 24.36 | 47520 | -- | -- |
| 255.45 | 0.746 | 9.81 | -- | -- | -- | -- | -- | 0.0671 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.07 | temperature | 20 | 720 | < th | dose dependent | sin | 23 | NA |
| 3 | 57.74 | temperature | 20 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 70 | 59.27 | temperature | 20 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 149 | 60.10 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 155 | 60.13 | temperature | 20 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 197 | 60.52 | temperature | 20 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 208 | 60.61 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 17 |
| 239 | 60.84 | temperature | 20 | 720 | < th | dose independent | sin | 0 | NA |
| 248 | 60.89 | temperature | 20 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 318 | 61.21 | temperature | 20 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 324 | 61.24 | temperature | 20 | 720 | < th | dose dependent | rect. | 10 | 5 |
| 352 | 61.44 | temperature | 20 | 720 | < th | dose dependent | sin | 16 | NA |
| 399 | 61.60 | temperature | 15 | 1440 | > th | dose independent | sin | 1 | NA |
| 427 | 61.72 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 21 |
| 465 | 61.87 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 4 |
| 491 | 61.95 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 522 | 62.06 | temperature | 15 | 1440 | < th | dose independent | rect. | 4 | 22 |
| 525 | 62.06 | temperature | 15 | 1440 | < th | dose dependent | rect. | 19 | 16 |
| 530 | 62.07 | temperature | 15 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 531 | 62.07 | temperature | 15 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 540 | 62.08 | temperature | 15 | 1440 | < th | dose independent | sin | 14 | NA |
| 541 | 62.08 | temperature | 15 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 544 | 62.08 | temperature | 15 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 546 | 62.08 | temperature | 15 | 1440 | < th | dose independent | rect. | 10 | 18 |
| 548 | 62.08 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 19 |
| 551 | 62.08 | temperature | 15 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 554 | 62.08 | temperature | 15 | 1440 | < th | dose dependent | sin | 10 | NA |
| 555 | 62.08 | temperature | 15 | 1440 | < th | dose dependent | rect. | 22 | 5 |
| 556 | 62.08 | temperature | 15 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 563 | 62.09 | temperature | 15 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 570 | 62.09 | temperature | 15 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 647 | 62.14 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 3 |
| 659 | 62.14 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 3 |
| 702 | 62.17 | temperature | 15 | 1440 | < th | dose independent | no | NA | NA |
| 704 | 62.17 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 708 | 62.17 | temperature | 15 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 796 | 62.24 | temperature | 15 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 806 | 62.25 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 855 | 62.28 | temperature | 15 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 859 | 62.29 | temperature | 15 | 1440 | > th | dose independent | no | NA | NA |
| 865 | 62.29 | temperature | 15 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 866 | 62.29 | temperature | 15 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 913 | 62.32 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 915 | 62.32 | temperature | 15 | 1440 | < th | dose dependent | rect. | 24 | 1 |